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https://github.com/nushell/nushell
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Added polars sink
command, that performs and streaming collect to t… (#13562)
# Description This exposes the `LazyFrame::sink_*` functionality to allow a streaming collect directly to the filesystem. This useful when working with data that is too large to fit into memory. # User-Facing Changes - Introduction of the `polars sink` command
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parent
ec3e0e593d
commit
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3 changed files with 209 additions and 1 deletions
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@ -70,6 +70,7 @@ features = [
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"serde",
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"serde",
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"serde-lazy",
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"serde-lazy",
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"strings",
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"strings",
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"streaming",
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"to_dummies",
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"to_dummies",
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]
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]
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optional = false
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optional = false
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@ -81,4 +82,4 @@ nu-engine = { path = "../nu-engine", version = "0.96.2" }
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nu-parser = { path = "../nu-parser", version = "0.96.2" }
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nu-parser = { path = "../nu-parser", version = "0.96.2" }
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nu-command = { path = "../nu-command", version = "0.96.2" }
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nu-command = { path = "../nu-command", version = "0.96.2" }
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nu-plugin-test-support = { path = "../nu-plugin-test-support", version = "0.96.2" }
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nu-plugin-test-support = { path = "../nu-plugin-test-support", version = "0.96.2" }
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tempfile.workspace = true
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tempfile.workspace = true
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@ -12,6 +12,7 @@ mod macro_commands;
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mod median;
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mod median;
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mod quantile;
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mod quantile;
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mod select;
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mod select;
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mod sink;
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mod sort_by_expr;
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mod sort_by_expr;
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mod to_lazy;
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mod to_lazy;
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@ -53,5 +54,6 @@ pub(crate) fn lazy_commands() -> Vec<Box<dyn PluginCommand<Plugin = PolarsPlugin
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Box::new(LazyQuantile),
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Box::new(LazyQuantile),
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Box::new(ToLazyFrame),
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Box::new(ToLazyFrame),
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Box::new(ToLazyGroupBy),
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Box::new(ToLazyGroupBy),
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Box::new(sink::Sink),
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]
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]
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}
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}
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205
crates/nu_plugin_polars/src/dataframe/lazy/sink.rs
Normal file
205
crates/nu_plugin_polars/src/dataframe/lazy/sink.rs
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@ -0,0 +1,205 @@
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use std::path::PathBuf;
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use crate::{
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values::{cant_convert_err, PolarsPluginObject, PolarsPluginType},
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PolarsPlugin,
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};
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use super::super::values::NuLazyFrame;
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use nu_path::expand_path_with;
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use nu_plugin::{EngineInterface, EvaluatedCall, PluginCommand};
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use nu_protocol::{
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Category, Example, LabeledError, PipelineData, ShellError, Signature, Span, Spanned,
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SyntaxShape, Type, Value,
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};
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use polars::error::PolarsError;
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use polars_io::{
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csv::write::CsvWriterOptions, ipc::IpcWriterOptions, json::JsonWriterOptions,
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parquet::write::ParquetWriteOptions,
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};
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#[derive(Clone)]
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pub struct Sink;
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impl PluginCommand for Sink {
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type Plugin = PolarsPlugin;
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fn name(&self) -> &str {
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"polars sink"
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}
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fn usage(&self) -> &str {
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"Streams a collect result to a file. This is useful if the result is too large for memory. Supports parquet, ipc/arrow, csv, and json formats."
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}
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fn signature(&self) -> Signature {
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Signature::build(self.name())
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.required("path", SyntaxShape::Filepath, "Path to write to.")
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.named(
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"type",
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SyntaxShape::String,
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"File type: csv, json, parquet, arrow/ipc. If omitted, derive from file extension",
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Some('t'),
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)
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.input_output_type(Type::Any, Type::String)
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.category(Category::Custom("lazyframe".into()))
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}
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fn examples(&self) -> Vec<Example> {
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vec![Example {
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description: "Collect and save the output to the specified file",
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example: "[[a b];[1 2] [3 4]] | polars into-lazy | polars sink /tmp/foo.parquet",
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result: None,
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}]
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}
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fn run(
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&self,
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plugin: &Self::Plugin,
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engine: &EngineInterface,
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call: &EvaluatedCall,
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input: PipelineData,
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) -> Result<PipelineData, LabeledError> {
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let value = input.into_value(call.head)?;
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match PolarsPluginObject::try_from_value(plugin, &value)? {
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PolarsPluginObject::NuDataFrame(df) => command(plugin, engine, call, df.lazy()),
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PolarsPluginObject::NuLazyFrame(lazy) => command(plugin, engine, call, lazy),
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_ => Err(cant_convert_err(
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&value,
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&[PolarsPluginType::NuDataFrame, PolarsPluginType::NuLazyFrame],
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)),
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}
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.map_err(LabeledError::from)
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}
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}
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fn command(
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_plugin: &PolarsPlugin,
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engine: &EngineInterface,
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call: &EvaluatedCall,
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lazy: NuLazyFrame,
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) -> Result<PipelineData, ShellError> {
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let spanned_file: Spanned<PathBuf> = call.req(0)?;
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let file_path = expand_path_with(&spanned_file.item, engine.get_current_dir()?, true);
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let file_span = spanned_file.span;
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let type_option: Option<Spanned<String>> = call.get_flag("type")?;
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let type_id = match &type_option {
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Some(ref t) => Some((t.item.to_owned(), "Invalid type", t.span)),
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None => file_path.extension().map(|e| {
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(
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e.to_string_lossy().into_owned(),
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"Invalid extension",
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spanned_file.span,
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)
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}),
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};
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let polars_df = lazy.to_polars();
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match type_id {
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Some((e, msg, blamed)) => match e.as_str() {
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"parquet" | "parq" => polars_df
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.sink_parquet(&file_path, ParquetWriteOptions::default())
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.map_err(|e| file_save_error(e, file_span))?,
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"csv" => polars_df
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.sink_csv(&file_path, CsvWriterOptions::default())
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.map_err(|e| file_save_error(e, file_span))?,
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"ipc" | "arrow" => polars_df
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.sink_ipc(&file_path, IpcWriterOptions::default())
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.map_err(|e| file_save_error(e, file_span))?,
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"json" | "jsonl" | "ndjson" => polars_df
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.sink_json(&file_path, JsonWriterOptions::default())
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.map_err(|e| file_save_error(e, file_span))?,
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_ => Err(ShellError::FileNotFoundCustom {
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msg: format!("{msg}. Supported values: csv, tsv, parquet, ipc, arrow, json, jsonl"),
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span: blamed,
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})?,
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},
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None => Err(ShellError::FileNotFoundCustom {
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msg: "File without extension".into(),
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span: spanned_file.span,
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})?,
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};
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let file_value = Value::string(format!("saved {:?}", &file_path), file_span);
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Ok(PipelineData::Value(
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Value::list(vec![file_value], call.head),
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None,
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))
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}
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fn file_save_error(e: PolarsError, span: Span) -> ShellError {
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ShellError::GenericError {
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error: "Error saving file".into(),
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msg: e.to_string(),
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span: Some(span),
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help: None,
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inner: vec![],
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}
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}
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#[cfg(test)]
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pub mod test {
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use nu_plugin_test_support::PluginTest;
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use nu_protocol::{Span, Value};
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use uuid::Uuid;
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use crate::PolarsPlugin;
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pub fn test_sink(extension: &str) -> Result<(), Box<dyn std::error::Error>> {
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let tmp_dir = tempfile::tempdir()?;
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let mut tmp_file = tmp_dir.path().to_owned();
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tmp_file.push(format!("{}.{}", Uuid::new_v4(), extension));
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let tmp_file_str = tmp_file.to_str().expect("should be able to get file path");
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let cmd = format!(
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"[[a b]; [1 2] [3 4]] | polars into-lazy | polars sink {}",
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tmp_file_str
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);
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let mut plugin_test = PluginTest::new("polars", PolarsPlugin::default().into())?;
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plugin_test.engine_state_mut().add_env_var(
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"PWD".to_string(),
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Value::string(
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tmp_dir
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.path()
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.to_str()
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.expect("should be able to get path")
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.to_owned(),
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Span::test_data(),
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),
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);
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let pipeline_data = plugin_test.eval(&cmd)?;
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assert!(tmp_file.exists());
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let value = pipeline_data.into_value(Span::test_data())?;
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let list = value.as_list()?;
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assert_eq!(list.len(), 1);
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let msg = list.first().expect("should have a value").as_str()?;
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assert!(msg.contains("saved"));
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Ok(())
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}
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#[test]
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pub fn test_to_parquet() -> Result<(), Box<dyn std::error::Error>> {
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test_sink("parquet")
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}
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#[test]
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pub fn test_to_ipc() -> Result<(), Box<dyn std::error::Error>> {
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test_sink("ipc")
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}
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#[test]
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pub fn test_to_csv() -> Result<(), Box<dyn std::error::Error>> {
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test_sink("csv")
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}
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#[test]
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pub fn test_to_json() -> Result<(), Box<dyn std::error::Error>> {
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test_sink("ndjson")
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}
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}
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