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bat/tests/benchmarks/test-src/numpy_test_multiarray.py

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2021-11-22 20:54:04 +00:00
import collections.abc
import tempfile
import sys
import shutil
import warnings
import operator
import io
import itertools
import functools
import ctypes
import os
import gc
import weakref
import pytest
from contextlib import contextmanager
from numpy.compat import pickle
import pathlib
import builtins
from decimal import Decimal
import numpy as np
from numpy.compat import strchar
import numpy.core._multiarray_tests as _multiarray_tests
from numpy.testing import (
assert_, assert_raises, assert_warns, assert_equal, assert_almost_equal,
assert_array_equal, assert_raises_regex, assert_array_almost_equal,
assert_allclose, IS_PYPY, HAS_REFCOUNT, assert_array_less, runstring,
temppath, suppress_warnings, break_cycles,
)
from numpy.testing._private.utils import _no_tracing
from numpy.core.tests._locales import CommaDecimalPointLocale
# Need to test an object that does not fully implement math interface
from datetime import timedelta, datetime
def _aligned_zeros(shape, dtype=float, order="C", align=None):
"""
Allocate a new ndarray with aligned memory.
The ndarray is guaranteed *not* aligned to twice the requested alignment.
Eg, if align=4, guarantees it is not aligned to 8. If align=None uses
dtype.alignment."""
dtype = np.dtype(dtype)
if dtype == np.dtype(object):
# Can't do this, fall back to standard allocation (which
# should always be sufficiently aligned)
if align is not None:
raise ValueError("object array alignment not supported")
return np.zeros(shape, dtype=dtype, order=order)
if align is None:
align = dtype.alignment
if not hasattr(shape, '__len__'):
shape = (shape,)
size = functools.reduce(operator.mul, shape) * dtype.itemsize
buf = np.empty(size + 2*align + 1, np.uint8)
ptr = buf.__array_interface__['data'][0]
offset = ptr % align
if offset != 0:
offset = align - offset
if (ptr % (2*align)) == 0:
offset += align
# Note: slices producing 0-size arrays do not necessarily change
# data pointer --- so we use and allocate size+1
buf = buf[offset:offset+size+1][:-1]
data = np.ndarray(shape, dtype, buf, order=order)
data.fill(0)
return data
class TestFlags:
def setup(self):
self.a = np.arange(10)
def test_writeable(self):
mydict = locals()
self.a.flags.writeable = False
assert_raises(ValueError, runstring, 'self.a[0] = 3', mydict)
assert_raises(ValueError, runstring, 'self.a[0:1].itemset(3)', mydict)
self.a.flags.writeable = True
self.a[0] = 5
self.a[0] = 0
def test_writeable_any_base(self):
# Ensure that any base being writeable is sufficient to change flag;
# this is especially interesting for arrays from an array interface.
arr = np.arange(10)
class subclass(np.ndarray):
pass
# Create subclass so base will not be collapsed, this is OK to change
view1 = arr.view(subclass)
view2 = view1[...]
arr.flags.writeable = False
view2.flags.writeable = False
view2.flags.writeable = True # Can be set to True again.
arr = np.arange(10)
class frominterface:
def __init__(self, arr):
self.arr = arr
self.__array_interface__ = arr.__array_interface__
view1 = np.asarray(frominterface)
view2 = view1[...]
view2.flags.writeable = False
view2.flags.writeable = True
view1.flags.writeable = False
view2.flags.writeable = False
with assert_raises(ValueError):
# Must assume not writeable, since only base is not:
view2.flags.writeable = True
def test_writeable_from_readonly(self):
# gh-9440 - make sure fromstring, from buffer on readonly buffers
# set writeable False
data = b'\x00' * 100
vals = np.frombuffer(data, 'B')
assert_raises(ValueError, vals.setflags, write=True)
types = np.dtype( [('vals', 'u1'), ('res3', 'S4')] )
values = np.core.records.fromstring(data, types)
vals = values['vals']
assert_raises(ValueError, vals.setflags, write=True)
def test_writeable_from_buffer(self):
data = bytearray(b'\x00' * 100)
vals = np.frombuffer(data, 'B')
assert_(vals.flags.writeable)
vals.setflags(write=False)
assert_(vals.flags.writeable is False)
vals.setflags(write=True)
assert_(vals.flags.writeable)
types = np.dtype( [('vals', 'u1'), ('res3', 'S4')] )
values = np.core.records.fromstring(data, types)
vals = values['vals']
assert_(vals.flags.writeable)
vals.setflags(write=False)
assert_(vals.flags.writeable is False)
vals.setflags(write=True)
assert_(vals.flags.writeable)
@pytest.mark.skipif(IS_PYPY, reason="PyPy always copies")
def test_writeable_pickle(self):
import pickle
# Small arrays will be copied without setting base.
# See condition for using PyArray_SetBaseObject in
# array_setstate.
a = np.arange(1000)
for v in range(pickle.HIGHEST_PROTOCOL):
vals = pickle.loads(pickle.dumps(a, v))
assert_(vals.flags.writeable)
assert_(isinstance(vals.base, bytes))
def test_writeable_from_c_data(self):
# Test that the writeable flag can be changed for an array wrapping
# low level C-data, but not owning its data.
# Also see that this is deprecated to change from python.
from numpy.core._multiarray_tests import get_c_wrapping_array
arr_writeable = get_c_wrapping_array(True)
assert not arr_writeable.flags.owndata
assert arr_writeable.flags.writeable
view = arr_writeable[...]
# Toggling the writeable flag works on the view:
view.flags.writeable = False
assert not view.flags.writeable
view.flags.writeable = True
assert view.flags.writeable
# Flag can be unset on the arr_writeable:
arr_writeable.flags.writeable = False
arr_readonly = get_c_wrapping_array(False)
assert not arr_readonly.flags.owndata
assert not arr_readonly.flags.writeable
for arr in [arr_writeable, arr_readonly]:
view = arr[...]
view.flags.writeable = False # make sure it is readonly
arr.flags.writeable = False
assert not arr.flags.writeable
with assert_raises(ValueError):
view.flags.writeable = True
with warnings.catch_warnings():
warnings.simplefilter("error", DeprecationWarning)
with assert_raises(DeprecationWarning):
arr.flags.writeable = True
with assert_warns(DeprecationWarning):
arr.flags.writeable = True
def test_warnonwrite(self):
a = np.arange(10)
a.flags._warn_on_write = True
with warnings.catch_warnings(record=True) as w:
warnings.filterwarnings('always')
a[1] = 10
a[2] = 10
# only warn once
assert_(len(w) == 1)
def test_otherflags(self):
assert_equal(self.a.flags.carray, True)
assert_equal(self.a.flags['C'], True)
assert_equal(self.a.flags.farray, False)
assert_equal(self.a.flags.behaved, True)
assert_equal(self.a.flags.fnc, False)
assert_equal(self.a.flags.forc, True)
assert_equal(self.a.flags.owndata, True)
assert_equal(self.a.flags.writeable, True)
assert_equal(self.a.flags.aligned, True)
with assert_warns(DeprecationWarning):
assert_equal(self.a.flags.updateifcopy, False)
with assert_warns(DeprecationWarning):
assert_equal(self.a.flags['U'], False)
assert_equal(self.a.flags['UPDATEIFCOPY'], False)
assert_equal(self.a.flags.writebackifcopy, False)
assert_equal(self.a.flags['X'], False)
assert_equal(self.a.flags['WRITEBACKIFCOPY'], False)
def test_string_align(self):
a = np.zeros(4, dtype=np.dtype('|S4'))
assert_(a.flags.aligned)
# not power of two are accessed byte-wise and thus considered aligned
a = np.zeros(5, dtype=np.dtype('|S4'))
assert_(a.flags.aligned)
def test_void_align(self):
a = np.zeros(4, dtype=np.dtype([("a", "i4"), ("b", "i4")]))
assert_(a.flags.aligned)
class TestHash:
# see #3793
def test_int(self):
for st, ut, s in [(np.int8, np.uint8, 8),
(np.int16, np.uint16, 16),
(np.int32, np.uint32, 32),
(np.int64, np.uint64, 64)]:
for i in range(1, s):
assert_equal(hash(st(-2**i)), hash(-2**i),
err_msg="%r: -2**%d" % (st, i))
assert_equal(hash(st(2**(i - 1))), hash(2**(i - 1)),
err_msg="%r: 2**%d" % (st, i - 1))
assert_equal(hash(st(2**i - 1)), hash(2**i - 1),
err_msg="%r: 2**%d - 1" % (st, i))
i = max(i - 1, 1)
assert_equal(hash(ut(2**(i - 1))), hash(2**(i - 1)),
err_msg="%r: 2**%d" % (ut, i - 1))
assert_equal(hash(ut(2**i - 1)), hash(2**i - 1),
err_msg="%r: 2**%d - 1" % (ut, i))
class TestAttributes:
def setup(self):
self.one = np.arange(10)
self.two = np.arange(20).reshape(4, 5)
self.three = np.arange(60, dtype=np.float64).reshape(2, 5, 6)
def test_attributes(self):
assert_equal(self.one.shape, (10,))
assert_equal(self.two.shape, (4, 5))
assert_equal(self.three.shape, (2, 5, 6))
self.three.shape = (10, 3, 2)
assert_equal(self.three.shape, (10, 3, 2))
self.three.shape = (2, 5, 6)
assert_equal(self.one.strides, (self.one.itemsize,))
num = self.two.itemsize
assert_equal(self.two.strides, (5*num, num))
num = self.three.itemsize
assert_equal(self.three.strides, (30*num, 6*num, num))
assert_equal(self.one.ndim, 1)
assert_equal(self.two.ndim, 2)
assert_equal(self.three.ndim, 3)
num = self.two.itemsize
assert_equal(self.two.size, 20)
assert_equal(self.two.nbytes, 20*num)
assert_equal(self.two.itemsize, self.two.dtype.itemsize)
assert_equal(self.two.base, np.arange(20))
def test_dtypeattr(self):
assert_equal(self.one.dtype, np.dtype(np.int_))
assert_equal(self.three.dtype, np.dtype(np.float_))
assert_equal(self.one.dtype.char, 'l')
assert_equal(self.three.dtype.char, 'd')
assert_(self.three.dtype.str[0] in '<>')
assert_equal(self.one.dtype.str[1], 'i')
assert_equal(self.three.dtype.str[1], 'f')
def test_int_subclassing(self):
# Regression test for https://github.com/numpy/numpy/pull/3526
numpy_int = np.int_(0)
# int_ doesn't inherit from Python int, because it's not fixed-width
assert_(not isinstance(numpy_int, int))
def test_stridesattr(self):
x = self.one
def make_array(size, offset, strides):
return np.ndarray(size, buffer=x, dtype=int,
offset=offset*x.itemsize,
strides=strides*x.itemsize)
assert_equal(make_array(4, 4, -1), np.array([4, 3, 2, 1]))
assert_raises(ValueError, make_array, 4, 4, -2)
assert_raises(ValueError, make_array, 4, 2, -1)
assert_raises(ValueError, make_array, 8, 3, 1)
assert_equal(make_array(8, 3, 0), np.array([3]*8))
# Check behavior reported in gh-2503:
assert_raises(ValueError, make_array, (2, 3), 5, np.array([-2, -3]))
make_array(0, 0, 10)
def test_set_stridesattr(self):
x = self.one
def make_array(size, offset, strides):
try:
r = np.ndarray([size], dtype=int, buffer=x,
offset=offset*x.itemsize)
except Exception as e:
raise RuntimeError(e)
r.strides = strides = strides*x.itemsize
return r
assert_equal(make_array(4, 4, -1), np.array([4, 3, 2, 1]))
assert_equal(make_array(7, 3, 1), np.array([3, 4, 5, 6, 7, 8, 9]))
assert_raises(ValueError, make_array, 4, 4, -2)
assert_raises(ValueError, make_array, 4, 2, -1)
assert_raises(RuntimeError, make_array, 8, 3, 1)
# Check that the true extent of the array is used.
# Test relies on as_strided base not exposing a buffer.
x = np.lib.stride_tricks.as_strided(np.arange(1), (10, 10), (0, 0))
def set_strides(arr, strides):
arr.strides = strides
assert_raises(ValueError, set_strides, x, (10*x.itemsize, x.itemsize))
# Test for offset calculations:
x = np.lib.stride_tricks.as_strided(np.arange(10, dtype=np.int8)[-1],
shape=(10,), strides=(-1,))
assert_raises(ValueError, set_strides, x[::-1], -1)
a = x[::-1]
a.strides = 1
a[::2].strides = 2
# test 0d
arr_0d = np.array(0)
arr_0d.strides = ()
assert_raises(TypeError, set_strides, arr_0d, None)
def test_fill(self):
for t in "?bhilqpBHILQPfdgFDGO":
x = np.empty((3, 2, 1), t)
y = np.empty((3, 2, 1), t)
x.fill(1)
y[...] = 1
assert_equal(x, y)
def test_fill_max_uint64(self):
x = np.empty((3, 2, 1), dtype=np.uint64)
y = np.empty((3, 2, 1), dtype=np.uint64)
value = 2**64 - 1
y[...] = value
x.fill(value)
assert_array_equal(x, y)
def test_fill_struct_array(self):
# Filling from a scalar
x = np.array([(0, 0.0), (1, 1.0)], dtype='i4,f8')
x.fill(x[0])
assert_equal(x['f1'][1], x['f1'][0])
# Filling from a tuple that can be converted
# to a scalar
x = np.zeros(2, dtype=[('a', 'f8'), ('b', 'i4')])
x.fill((3.5, -2))
assert_array_equal(x['a'], [3.5, 3.5])
assert_array_equal(x['b'], [-2, -2])
class TestArrayConstruction:
def test_array(self):
d = np.ones(6)
r = np.array([d, d])
assert_equal(r, np.ones((2, 6)))
d = np.ones(6)
tgt = np.ones((2, 6))
r = np.array([d, d])
assert_equal(r, tgt)
tgt[1] = 2
r = np.array([d, d + 1])
assert_equal(r, tgt)
d = np.ones(6)
r = np.array([[d, d]])
assert_equal(r, np.ones((1, 2, 6)))
d = np.ones(6)
r = np.array([[d, d], [d, d]])
assert_equal(r, np.ones((2, 2, 6)))
d = np.ones((6, 6))
r = np.array([d, d])
assert_equal(r, np.ones((2, 6, 6)))
d = np.ones((6, ))
r = np.array([[d, d + 1], d + 2], dtype=object)
assert_equal(len(r), 2)
assert_equal(r[0], [d, d + 1])
assert_equal(r[1], d + 2)
tgt = np.ones((2, 3), dtype=bool)
tgt[0, 2] = False
tgt[1, 0:2] = False
r = np.array([[True, True, False], [False, False, True]])
assert_equal(r, tgt)
r = np.array([[True, False], [True, False], [False, True]])
assert_equal(r, tgt.T)
def test_array_empty(self):
assert_raises(TypeError, np.array)
def test_array_copy_false(self):
d = np.array([1, 2, 3])
e = np.array(d, copy=False)
d[1] = 3
assert_array_equal(e, [1, 3, 3])
e = np.array(d, copy=False, order='F')
d[1] = 4
assert_array_equal(e, [1, 4, 3])
e[2] = 7
assert_array_equal(d, [1, 4, 7])
def test_array_copy_true(self):
d = np.array([[1,2,3], [1, 2, 3]])
e = np.array(d, copy=True)
d[0, 1] = 3
e[0, 2] = -7
assert_array_equal(e, [[1, 2, -7], [1, 2, 3]])
assert_array_equal(d, [[1, 3, 3], [1, 2, 3]])
e = np.array(d, copy=True, order='F')
d[0, 1] = 5
e[0, 2] = 7
assert_array_equal(e, [[1, 3, 7], [1, 2, 3]])
assert_array_equal(d, [[1, 5, 3], [1,2,3]])
def test_array_cont(self):
d = np.ones(10)[::2]
assert_(np.ascontiguousarray(d).flags.c_contiguous)
assert_(np.ascontiguousarray(d).flags.f_contiguous)
assert_(np.asfortranarray(d).flags.c_contiguous)
assert_(np.asfortranarray(d).flags.f_contiguous)
d = np.ones((10, 10))[::2,::2]
assert_(np.ascontiguousarray(d).flags.c_contiguous)
assert_(np.asfortranarray(d).flags.f_contiguous)
class TestAssignment:
def test_assignment_broadcasting(self):
a = np.arange(6).reshape(2, 3)
# Broadcasting the input to the output
a[...] = np.arange(3)
assert_equal(a, [[0, 1, 2], [0, 1, 2]])
a[...] = np.arange(2).reshape(2, 1)
assert_equal(a, [[0, 0, 0], [1, 1, 1]])
# For compatibility with <= 1.5, a limited version of broadcasting
# the output to the input.
#
# This behavior is inconsistent with NumPy broadcasting
# in general, because it only uses one of the two broadcasting
# rules (adding a new "1" dimension to the left of the shape),
# applied to the output instead of an input. In NumPy 2.0, this kind
# of broadcasting assignment will likely be disallowed.
a[...] = np.arange(6)[::-1].reshape(1, 2, 3)
assert_equal(a, [[5, 4, 3], [2, 1, 0]])
# The other type of broadcasting would require a reduction operation.
def assign(a, b):
a[...] = b
assert_raises(ValueError, assign, a, np.arange(12).reshape(2, 2, 3))
def test_assignment_errors(self):
# Address issue #2276
class C:
pass
a = np.zeros(1)
def assign(v):
a[0] = v
assert_raises((AttributeError, TypeError), assign, C())
assert_raises(ValueError, assign, [1])
def test_unicode_assignment(self):
# gh-5049
from numpy.core.numeric import set_string_function
@contextmanager
def inject_str(s):
""" replace ndarray.__str__ temporarily """
set_string_function(lambda x: s, repr=False)
try:
yield
finally:
set_string_function(None, repr=False)
a1d = np.array([u'test'])
a0d = np.array(u'done')
with inject_str(u'bad'):
a1d[0] = a0d # previously this would invoke __str__
assert_equal(a1d[0], u'done')
# this would crash for the same reason
np.array([np.array(u'\xe5\xe4\xf6')])
def test_stringlike_empty_list(self):
# gh-8902
u = np.array([u'done'])
b = np.array([b'done'])
class bad_sequence:
def __getitem__(self): pass
def __len__(self): raise RuntimeError
assert_raises(ValueError, operator.setitem, u, 0, [])
assert_raises(ValueError, operator.setitem, b, 0, [])
assert_raises(ValueError, operator.setitem, u, 0, bad_sequence())
assert_raises(ValueError, operator.setitem, b, 0, bad_sequence())
def test_longdouble_assignment(self):
# only relevant if longdouble is larger than float
# we're looking for loss of precision
for dtype in (np.longdouble, np.longcomplex):
# gh-8902
tinyb = np.nextafter(np.longdouble(0), 1).astype(dtype)
tinya = np.nextafter(np.longdouble(0), -1).astype(dtype)
# construction
tiny1d = np.array([tinya])
assert_equal(tiny1d[0], tinya)
# scalar = scalar
tiny1d[0] = tinyb
assert_equal(tiny1d[0], tinyb)
# 0d = scalar
tiny1d[0, ...] = tinya
assert_equal(tiny1d[0], tinya)
# 0d = 0d
tiny1d[0, ...] = tinyb[...]
assert_equal(tiny1d[0], tinyb)
# scalar = 0d
tiny1d[0] = tinyb[...]
assert_equal(tiny1d[0], tinyb)
arr = np.array([np.array(tinya)])
assert_equal(arr[0], tinya)
def test_cast_to_string(self):
# cast to str should do "str(scalar)", not "str(scalar.item())"
# Example: In python2, str(float) is truncated, so we want to avoid
# str(np.float64(...).item()) as this would incorrectly truncate.
a = np.zeros(1, dtype='S20')
a[:] = np.array(['1.12345678901234567890'], dtype='f8')
assert_equal(a[0], b"1.1234567890123457")
class TestDtypedescr:
def test_construction(self):
d1 = np.dtype('i4')
assert_equal(d1, np.dtype(np.int32))
d2 = np.dtype('f8')
assert_equal(d2, np.dtype(np.float64))
def test_byteorders(self):
assert_(np.dtype('<i4') != np.dtype('>i4'))
assert_(np.dtype([('a', '<i4')]) != np.dtype([('a', '>i4')]))
def test_structured_non_void(self):
fields = [('a', '<i2'), ('b', '<i2')]
dt_int = np.dtype(('i4', fields))
assert_equal(str(dt_int), "(numpy.int32, [('a', '<i2'), ('b', '<i2')])")
# gh-9821
arr_int = np.zeros(4, dt_int)
assert_equal(repr(arr_int),
"array([0, 0, 0, 0], dtype=(numpy.int32, [('a', '<i2'), ('b', '<i2')]))")
class TestZeroRank:
def setup(self):
self.d = np.array(0), np.array('x', object)
def test_ellipsis_subscript(self):
a, b = self.d
assert_equal(a[...], 0)
assert_equal(b[...], 'x')
assert_(a[...].base is a) # `a[...] is a` in numpy <1.9.
assert_(b[...].base is b) # `b[...] is b` in numpy <1.9.
def test_empty_subscript(self):
a, b = self.d
assert_equal(a[()], 0)
assert_equal(b[()], 'x')
assert_(type(a[()]) is a.dtype.type)
assert_(type(b[()]) is str)
def test_invalid_subscript(self):
a, b = self.d
assert_raises(IndexError, lambda x: x[0], a)
assert_raises(IndexError, lambda x: x[0], b)
assert_raises(IndexError, lambda x: x[np.array([], int)], a)
assert_raises(IndexError, lambda x: x[np.array([], int)], b)
def test_ellipsis_subscript_assignment(self):
a, b = self.d
a[...] = 42
assert_equal(a, 42)
b[...] = ''
assert_equal(b.item(), '')
def test_empty_subscript_assignment(self):
a, b = self.d
a[()] = 42
assert_equal(a, 42)
b[()] = ''
assert_equal(b.item(), '')
def test_invalid_subscript_assignment(self):
a, b = self.d
def assign(x, i, v):
x[i] = v
assert_raises(IndexError, assign, a, 0, 42)
assert_raises(IndexError, assign, b, 0, '')
assert_raises(ValueError, assign, a, (), '')
def test_newaxis(self):
a, b = self.d
assert_equal(a[np.newaxis].shape, (1,))
assert_equal(a[..., np.newaxis].shape, (1,))
assert_equal(a[np.newaxis, ...].shape, (1,))
assert_equal(a[..., np.newaxis].shape, (1,))
assert_equal(a[np.newaxis, ..., np.newaxis].shape, (1, 1))
assert_equal(a[..., np.newaxis, np.newaxis].shape, (1, 1))
assert_equal(a[np.newaxis, np.newaxis, ...].shape, (1, 1))
assert_equal(a[(np.newaxis,)*10].shape, (1,)*10)
def test_invalid_newaxis(self):
a, b = self.d
def subscript(x, i):
x[i]
assert_raises(IndexError, subscript, a, (np.newaxis, 0))
assert_raises(IndexError, subscript, a, (np.newaxis,)*50)
def test_constructor(self):
x = np.ndarray(())
x[()] = 5
assert_equal(x[()], 5)
y = np.ndarray((), buffer=x)
y[()] = 6
assert_equal(x[()], 6)
# strides and shape must be the same length
with pytest.raises(ValueError):
np.ndarray((2,), strides=())
with pytest.raises(ValueError):
np.ndarray((), strides=(2,))
def test_output(self):
x = np.array(2)
assert_raises(ValueError, np.add, x, [1], x)
def test_real_imag(self):
# contiguity checks are for gh-11245
x = np.array(1j)
xr = x.real
xi = x.imag
assert_equal(xr, np.array(0))
assert_(type(xr) is np.ndarray)
assert_equal(xr.flags.contiguous, True)
assert_equal(xr.flags.f_contiguous, True)
assert_equal(xi, np.array(1))
assert_(type(xi) is np.ndarray)
assert_equal(xi.flags.contiguous, True)
assert_equal(xi.flags.f_contiguous, True)
class TestScalarIndexing:
def setup(self):
self.d = np.array([0, 1])[0]
def test_ellipsis_subscript(self):
a = self.d
assert_equal(a[...], 0)
assert_equal(a[...].shape, ())
def test_empty_subscript(self):
a = self.d
assert_equal(a[()], 0)
assert_equal(a[()].shape, ())
def test_invalid_subscript(self):
a = self.d
assert_raises(IndexError, lambda x: x[0], a)
assert_raises(IndexError, lambda x: x[np.array([], int)], a)
def test_invalid_subscript_assignment(self):
a = self.d
def assign(x, i, v):
x[i] = v
assert_raises(TypeError, assign, a, 0, 42)
def test_newaxis(self):
a = self.d
assert_equal(a[np.newaxis].shape, (1,))
assert_equal(a[..., np.newaxis].shape, (1,))
assert_equal(a[np.newaxis, ...].shape, (1,))
assert_equal(a[..., np.newaxis].shape, (1,))
assert_equal(a[np.newaxis, ..., np.newaxis].shape, (1, 1))
assert_equal(a[..., np.newaxis, np.newaxis].shape, (1, 1))
assert_equal(a[np.newaxis, np.newaxis, ...].shape, (1, 1))
assert_equal(a[(np.newaxis,)*10].shape, (1,)*10)
def test_invalid_newaxis(self):
a = self.d
def subscript(x, i):
x[i]
assert_raises(IndexError, subscript, a, (np.newaxis, 0))
assert_raises(IndexError, subscript, a, (np.newaxis,)*50)
def test_overlapping_assignment(self):
# With positive strides
a = np.arange(4)
a[:-1] = a[1:]
assert_equal(a, [1, 2, 3, 3])
a = np.arange(4)
a[1:] = a[:-1]
assert_equal(a, [0, 0, 1, 2])
# With positive and negative strides
a = np.arange(4)
a[:] = a[::-1]
assert_equal(a, [3, 2, 1, 0])
a = np.arange(6).reshape(2, 3)
a[::-1,:] = a[:, ::-1]
assert_equal(a, [[5, 4, 3], [2, 1, 0]])
a = np.arange(6).reshape(2, 3)
a[::-1, ::-1] = a[:, ::-1]
assert_equal(a, [[3, 4, 5], [0, 1, 2]])
# With just one element overlapping
a = np.arange(5)
a[:3] = a[2:]
assert_equal(a, [2, 3, 4, 3, 4])
a = np.arange(5)
a[2:] = a[:3]
assert_equal(a, [0, 1, 0, 1, 2])
a = np.arange(5)
a[2::-1] = a[2:]
assert_equal(a, [4, 3, 2, 3, 4])
a = np.arange(5)
a[2:] = a[2::-1]
assert_equal(a, [0, 1, 2, 1, 0])
a = np.arange(5)
a[2::-1] = a[:1:-1]
assert_equal(a, [2, 3, 4, 3, 4])
a = np.arange(5)
a[:1:-1] = a[2::-1]
assert_equal(a, [0, 1, 0, 1, 2])
class TestCreation:
"""
Test the np.array constructor
"""
def test_from_attribute(self):
class x:
def __array__(self, dtype=None):
pass
assert_raises(ValueError, np.array, x())
def test_from_string(self):
types = np.typecodes['AllInteger'] + np.typecodes['Float']
nstr = ['123', '123']
result = np.array([123, 123], dtype=int)
for type in types:
msg = 'String conversion for %s' % type
assert_equal(np.array(nstr, dtype=type), result, err_msg=msg)
def test_void(self):
arr = np.array([], dtype='V')
assert_equal(arr.dtype.kind, 'V')
def test_too_big_error(self):
# 45341 is the smallest integer greater than sqrt(2**31 - 1).
# 3037000500 is the smallest integer greater than sqrt(2**63 - 1).
# We want to make sure that the square byte array with those dimensions
# is too big on 32 or 64 bit systems respectively.
if np.iinfo('intp').max == 2**31 - 1:
shape = (46341, 46341)
elif np.iinfo('intp').max == 2**63 - 1:
shape = (3037000500, 3037000500)
else:
return
assert_raises(ValueError, np.empty, shape, dtype=np.int8)
assert_raises(ValueError, np.zeros, shape, dtype=np.int8)
assert_raises(ValueError, np.ones, shape, dtype=np.int8)
@pytest.mark.skipif(np.dtype(np.intp).itemsize != 8,
reason="malloc may not fail on 32 bit systems")
def test_malloc_fails(self):
# This test is guaranteed to fail due to a too large allocation
with assert_raises(np.core._exceptions._ArrayMemoryError):
np.empty(np.iinfo(np.intp).max, dtype=np.uint8)
def test_zeros(self):
types = np.typecodes['AllInteger'] + np.typecodes['AllFloat']
for dt in types:
d = np.zeros((13,), dtype=dt)
assert_equal(np.count_nonzero(d), 0)
# true for ieee floats
assert_equal(d.sum(), 0)
assert_(not d.any())
d = np.zeros(2, dtype='(2,4)i4')
assert_equal(np.count_nonzero(d), 0)
assert_equal(d.sum(), 0)
assert_(not d.any())
d = np.zeros(2, dtype='4i4')
assert_equal(np.count_nonzero(d), 0)
assert_equal(d.sum(), 0)
assert_(not d.any())
d = np.zeros(2, dtype='(2,4)i4, (2,4)i4')
assert_equal(np.count_nonzero(d), 0)
@pytest.mark.slow
def test_zeros_big(self):
# test big array as they might be allocated different by the system
types = np.typecodes['AllInteger'] + np.typecodes['AllFloat']
for dt in types:
d = np.zeros((30 * 1024**2,), dtype=dt)
assert_(not d.any())
# This test can fail on 32-bit systems due to insufficient
# contiguous memory. Deallocating the previous array increases the
# chance of success.
del(d)
def test_zeros_obj(self):
# test initialization from PyLong(0)
d = np.zeros((13,), dtype=object)
assert_array_equal(d, [0] * 13)
assert_equal(np.count_nonzero(d), 0)
def test_zeros_obj_obj(self):
d = np.zeros(10, dtype=[('k', object, 2)])
assert_array_equal(d['k'], 0)
def test_zeros_like_like_zeros(self):
# test zeros_like returns the same as zeros
for c in np.typecodes['All']:
if c == 'V':
continue
d = np.zeros((3,3), dtype=c)
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
# explicitly check some special cases
d = np.zeros((3,3), dtype='S5')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
d = np.zeros((3,3), dtype='U5')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
d = np.zeros((3,3), dtype='<i4')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
d = np.zeros((3,3), dtype='>i4')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
d = np.zeros((3,3), dtype='<M8[s]')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
d = np.zeros((3,3), dtype='>M8[s]')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
d = np.zeros((3,3), dtype='f4,f4')
assert_array_equal(np.zeros_like(d), d)
assert_equal(np.zeros_like(d).dtype, d.dtype)
def test_empty_unicode(self):
# don't throw decode errors on garbage memory
for i in range(5, 100, 5):
d = np.empty(i, dtype='U')
str(d)
def test_sequence_non_homogenous(self):
assert_equal(np.array([4, 2**80]).dtype, object)
assert_equal(np.array([4, 2**80, 4]).dtype, object)
assert_equal(np.array([2**80, 4]).dtype, object)
assert_equal(np.array([2**80] * 3).dtype, object)
assert_equal(np.array([[1, 1],[1j, 1j]]).dtype, complex)
assert_equal(np.array([[1j, 1j],[1, 1]]).dtype, complex)
assert_equal(np.array([[1, 1, 1],[1, 1j, 1.], [1, 1, 1]]).dtype, complex)
def test_non_sequence_sequence(self):
"""Should not segfault.
Class Fail breaks the sequence protocol for new style classes, i.e.,
those derived from object. Class Map is a mapping type indicated by
raising a ValueError. At some point we may raise a warning instead
of an error in the Fail case.
"""
class Fail:
def __len__(self):
return 1
def __getitem__(self, index):
raise ValueError()
class Map:
def __len__(self):
return 1
def __getitem__(self, index):
raise KeyError()
a = np.array([Map()])
assert_(a.shape == (1,))
assert_(a.dtype == np.dtype(object))
assert_raises(ValueError, np.array, [Fail()])
def test_no_len_object_type(self):
# gh-5100, want object array from iterable object without len()
class Point2:
def __init__(self):
pass
def __getitem__(self, ind):
if ind in [0, 1]:
return ind
else:
raise IndexError()
d = np.array([Point2(), Point2(), Point2()])
assert_equal(d.dtype, np.dtype(object))
def test_false_len_sequence(self):
# gh-7264, segfault for this example
class C:
def __getitem__(self, i):
raise IndexError
def __len__(self):
return 42
a = np.array(C()) # segfault?
assert_equal(len(a), 0)
def test_false_len_iterable(self):
# Special case where a bad __getitem__ makes us fall back on __iter__:
class C:
def __getitem__(self, x):
raise Exception
def __iter__(self):
return iter(())
def __len__(self):
return 2
a = np.empty(2)
with assert_raises(ValueError):
a[:] = C() # Segfault!
def test_failed_len_sequence(self):
# gh-7393
class A:
def __init__(self, data):
self._data = data
def __getitem__(self, item):
return type(self)(self._data[item])
def __len__(self):
return len(self._data)
# len(d) should give 3, but len(d[0]) will fail
d = A([1,2,3])
assert_equal(len(np.array(d)), 3)
def test_array_too_big(self):
# Test that array creation succeeds for arrays addressable by intp
# on the byte level and fails for too large arrays.
buf = np.zeros(100)
max_bytes = np.iinfo(np.intp).max
for dtype in ["intp", "S20", "b"]:
dtype = np.dtype(dtype)
itemsize = dtype.itemsize
np.ndarray(buffer=buf, strides=(0,),
shape=(max_bytes//itemsize,), dtype=dtype)
assert_raises(ValueError, np.ndarray, buffer=buf, strides=(0,),
shape=(max_bytes//itemsize + 1,), dtype=dtype)
def _ragged_creation(self, seq):
# without dtype=object, the ragged object should raise
with assert_warns(np.VisibleDeprecationWarning):
a = np.array(seq)
b = np.array(seq, dtype=object)
assert_equal(a, b)
return b
def test_ragged_ndim_object(self):
# Lists of mismatching depths are treated as object arrays
a = self._ragged_creation([[1], 2, 3])
assert_equal(a.shape, (3,))
assert_equal(a.dtype, object)
a = self._ragged_creation([1, [2], 3])
assert_equal(a.shape, (3,))
assert_equal(a.dtype, object)
a = self._ragged_creation([1, 2, [3]])
assert_equal(a.shape, (3,))
assert_equal(a.dtype, object)
def test_ragged_shape_object(self):
# The ragged dimension of a list is turned into an object array
a = self._ragged_creation([[1, 1], [2], [3]])
assert_equal(a.shape, (3,))
assert_equal(a.dtype, object)
a = self._ragged_creation([[1], [2, 2], [3]])
assert_equal(a.shape, (3,))
assert_equal(a.dtype, object)
a = self._ragged_creation([[1], [2], [3, 3]])
assert a.shape == (3,)
assert a.dtype == object
def test_array_of_ragged_array(self):
outer = np.array([None, None])
outer[0] = outer[1] = np.array([1, 2, 3])
assert np.array(outer).shape == (2,)
assert np.array([outer]).shape == (1, 2)
outer_ragged = np.array([None, None])
outer_ragged[0] = np.array([1, 2, 3])
outer_ragged[1] = np.array([1, 2, 3, 4])
# should both of these emit deprecation warnings?
assert np.array(outer_ragged).shape == (2,)
assert np.array([outer_ragged]).shape == (1, 2,)
def test_deep_nonragged_object(self):
# None of these should raise, even though they are missing dtype=object
a = np.array([[[Decimal(1)]]])
a = np.array([1, Decimal(1)])
a = np.array([[1], [Decimal(1)]])
class TestStructured:
def test_subarray_field_access(self):
a = np.zeros((3, 5), dtype=[('a', ('i4', (2, 2)))])
a['a'] = np.arange(60).reshape(3, 5, 2, 2)
# Since the subarray is always in C-order, a transpose
# does not swap the subarray:
assert_array_equal(a.T['a'], a['a'].transpose(1, 0, 2, 3))
# In Fortran order, the subarray gets appended
# like in all other cases, not prepended as a special case
b = a.copy(order='F')
assert_equal(a['a'].shape, b['a'].shape)
assert_equal(a.T['a'].shape, a.T.copy()['a'].shape)
def test_subarray_comparison(self):
# Check that comparisons between record arrays with
# multi-dimensional field types work properly
a = np.rec.fromrecords(
[([1, 2, 3], 'a', [[1, 2], [3, 4]]), ([3, 3, 3], 'b', [[0, 0], [0, 0]])],
dtype=[('a', ('f4', 3)), ('b', object), ('c', ('i4', (2, 2)))])
b = a.copy()
assert_equal(a == b, [True, True])
assert_equal(a != b, [False, False])
b[1].b = 'c'
assert_equal(a == b, [True, False])
assert_equal(a != b, [False, True])
for i in range(3):
b[0].a = a[0].a
b[0].a[i] = 5
assert_equal(a == b, [False, False])
assert_equal(a != b, [True, True])
for i in range(2):
for j in range(2):
b = a.copy()
b[0].c[i, j] = 10
assert_equal(a == b, [False, True])
assert_equal(a != b, [True, False])
# Check that broadcasting with a subarray works
a = np.array([[(0,)], [(1,)]], dtype=[('a', 'f8')])
b = np.array([(0,), (0,), (1,)], dtype=[('a', 'f8')])
assert_equal(a == b, [[True, True, False], [False, False, True]])
assert_equal(b == a, [[True, True, False], [False, False, True]])
a = np.array([[(0,)], [(1,)]], dtype=[('a', 'f8', (1,))])
b = np.array([(0,), (0,), (1,)], dtype=[('a', 'f8', (1,))])
assert_equal(a == b, [[True, True, False], [False, False, True]])
assert_equal(b == a, [[True, True, False], [False, False, True]])
a = np.array([[([0, 0],)], [([1, 1],)]], dtype=[('a', 'f8', (2,))])
b = np.array([([0, 0],), ([0, 1],), ([1, 1],)], dtype=[('a', 'f8', (2,))])
assert_equal(a == b, [[True, False, False], [False, False, True]])
assert_equal(b == a, [[True, False, False], [False, False, True]])
# Check that broadcasting Fortran-style arrays with a subarray work
a = np.array([[([0, 0],)], [([1, 1],)]], dtype=[('a', 'f8', (2,))], order='F')
b = np.array([([0, 0],), ([0, 1],), ([1, 1],)], dtype=[('a', 'f8', (2,))])
assert_equal(a == b, [[True, False, False], [False, False, True]])
assert_equal(b == a, [[True, False, False], [False, False, True]])
# Check that incompatible sub-array shapes don't result to broadcasting
x = np.zeros((1,), dtype=[('a', ('f4', (1, 2))), ('b', 'i1')])
y = np.zeros((1,), dtype=[('a', ('f4', (2,))), ('b', 'i1')])
# This comparison invokes deprecated behaviour, and will probably
# start raising an error eventually. What we really care about in this
# test is just that it doesn't return True.
with suppress_warnings() as sup:
sup.filter(FutureWarning, "elementwise == comparison failed")
assert_equal(x == y, False)
x = np.zeros((1,), dtype=[('a', ('f4', (2, 1))), ('b', 'i1')])
y = np.zeros((1,), dtype=[('a', ('f4', (2,))), ('b', 'i1')])
# This comparison invokes deprecated behaviour, and will probably
# start raising an error eventually. What we really care about in this
# test is just that it doesn't return True.
with suppress_warnings() as sup:
sup.filter(FutureWarning, "elementwise == comparison failed")
assert_equal(x == y, False)
# Check that structured arrays that are different only in
# byte-order work
a = np.array([(5, 42), (10, 1)], dtype=[('a', '>i8'), ('b', '<f8')])
b = np.array([(5, 43), (10, 1)], dtype=[('a', '<i8'), ('b', '>f8')])
assert_equal(a == b, [False, True])
def test_casting(self):
# Check that casting a structured array to change its byte order
# works
a = np.array([(1,)], dtype=[('a', '<i4')])
assert_(np.can_cast(a.dtype, [('a', '>i4')], casting='unsafe'))
b = a.astype([('a', '>i4')])
assert_equal(b, a.byteswap().newbyteorder())
assert_equal(a['a'][0], b['a'][0])
# Check that equality comparison works on structured arrays if
# they are 'equiv'-castable
a = np.array([(5, 42), (10, 1)], dtype=[('a', '>i4'), ('b', '<f8')])
b = np.array([(5, 42), (10, 1)], dtype=[('a', '<i4'), ('b', '>f8')])
assert_(np.can_cast(a.dtype, b.dtype, casting='equiv'))
assert_equal(a == b, [True, True])
# Check that 'equiv' casting can change byte order
assert_(np.can_cast(a.dtype, b.dtype, casting='equiv'))
c = a.astype(b.dtype, casting='equiv')
assert_equal(a == c, [True, True])
# Check that 'safe' casting can change byte order and up-cast
# fields
t = [('a', '<i8'), ('b', '>f8')]
assert_(np.can_cast(a.dtype, t, casting='safe'))
c = a.astype(t, casting='safe')
assert_equal((c == np.array([(5, 42), (10, 1)], dtype=t)),
[True, True])
# Check that 'same_kind' casting can change byte order and
# change field widths within a "kind"
t = [('a', '<i4'), ('b', '>f4')]
assert_(np.can_cast(a.dtype, t, casting='same_kind'))
c = a.astype(t, casting='same_kind')
assert_equal((c == np.array([(5, 42), (10, 1)], dtype=t)),
[True, True])
# Check that casting fails if the casting rule should fail on
# any of the fields
t = [('a', '>i8'), ('b', '<f4')]
assert_(not np.can_cast(a.dtype, t, casting='safe'))
assert_raises(TypeError, a.astype, t, casting='safe')
t = [('a', '>i2'), ('b', '<f8')]
assert_(not np.can_cast(a.dtype, t, casting='equiv'))
assert_raises(TypeError, a.astype, t, casting='equiv')
t = [('a', '>i8'), ('b', '<i2')]
assert_(not np.can_cast(a.dtype, t, casting='same_kind'))
assert_raises(TypeError, a.astype, t, casting='same_kind')
assert_(not np.can_cast(a.dtype, b.dtype, casting='no'))
assert_raises(TypeError, a.astype, b.dtype, casting='no')
# Check that non-'unsafe' casting can't change the set of field names
for casting in ['no', 'safe', 'equiv', 'same_kind']:
t = [('a', '>i4')]
assert_(not np.can_cast(a.dtype, t, casting=casting))
t = [('a', '>i4'), ('b', '<f8'), ('c', 'i4')]
assert_(not np.can_cast(a.dtype, t, casting=casting))
def test_objview(self):
# https://github.com/numpy/numpy/issues/3286
a = np.array([], dtype=[('a', 'f'), ('b', 'f'), ('c', 'O')])
a[['a', 'b']] # TypeError?
# https://github.com/numpy/numpy/issues/3253
dat2 = np.zeros(3, [('A', 'i'), ('B', '|O')])
dat2[['B', 'A']] # TypeError?
def test_setfield(self):
# https://github.com/numpy/numpy/issues/3126
struct_dt = np.dtype([('elem', 'i4', 5),])
dt = np.dtype([('field', 'i4', 10),('struct', struct_dt)])
x = np.zeros(1, dt)
x[0]['field'] = np.ones(10, dtype='i4')
x[0]['struct'] = np.ones(1, dtype=struct_dt)
assert_equal(x[0]['field'], np.ones(10, dtype='i4'))
def test_setfield_object(self):
# make sure object field assignment with ndarray value
# on void scalar mimics setitem behavior
b = np.zeros(1, dtype=[('x', 'O')])
# next line should work identically to b['x'][0] = np.arange(3)
b[0]['x'] = np.arange(3)
assert_equal(b[0]['x'], np.arange(3))
# check that broadcasting check still works
c = np.zeros(1, dtype=[('x', 'O', 5)])
def testassign():
c[0]['x'] = np.arange(3)
assert_raises(ValueError, testassign)
def test_zero_width_string(self):
# Test for PR #6430 / issues #473, #4955, #2585
dt = np.dtype([('I', int), ('S', 'S0')])
x = np.zeros(4, dtype=dt)
assert_equal(x['S'], [b'', b'', b'', b''])
assert_equal(x['S'].itemsize, 0)
x['S'] = ['a', 'b', 'c', 'd']
assert_equal(x['S'], [b'', b'', b'', b''])
assert_equal(x['I'], [0, 0, 0, 0])
# Variation on test case from #4955
x['S'][x['I'] == 0] = 'hello'
assert_equal(x['S'], [b'', b'', b'', b''])
assert_equal(x['I'], [0, 0, 0, 0])
# Variation on test case from #2585
x['S'] = 'A'
assert_equal(x['S'], [b'', b'', b'', b''])
assert_equal(x['I'], [0, 0, 0, 0])
# Allow zero-width dtypes in ndarray constructor
y = np.ndarray(4, dtype=x['S'].dtype)
assert_equal(y.itemsize, 0)
assert_equal(x['S'], y)
# More tests for indexing an array with zero-width fields
assert_equal(np.zeros(4, dtype=[('a', 'S0,S0'),
('b', 'u1')])['a'].itemsize, 0)
assert_equal(np.empty(3, dtype='S0,S0').itemsize, 0)
assert_equal(np.zeros(4, dtype='S0,u1')['f0'].itemsize, 0)
xx = x['S'].reshape((2, 2))
assert_equal(xx.itemsize, 0)
assert_equal(xx, [[b'', b''], [b'', b'']])
# check for no uninitialized memory due to viewing S0 array
assert_equal(xx[:].dtype, xx.dtype)
assert_array_equal(eval(repr(xx), dict(array=np.array)), xx)
b = io.BytesIO()
np.save(b, xx)
b.seek(0)
yy = np.load(b)
assert_equal(yy.itemsize, 0)
assert_equal(xx, yy)
with temppath(suffix='.npy') as tmp:
np.save(tmp, xx)
yy = np.load(tmp)
assert_equal(yy.itemsize, 0)
assert_equal(xx, yy)
def test_base_attr(self):
a = np.zeros(3, dtype='i4,f4')
b = a[0]
assert_(b.base is a)
def test_assignment(self):
def testassign(arr, v):
c = arr.copy()
c[0] = v # assign using setitem
c[1:] = v # assign using "dtype_transfer" code paths
return c
dt = np.dtype([('foo', 'i8'), ('bar', 'i8')])
arr = np.ones(2, dt)
v1 = np.array([(2,3)], dtype=[('foo', 'i8'), ('bar', 'i8')])
v2 = np.array([(2,3)], dtype=[('bar', 'i8'), ('foo', 'i8')])
v3 = np.array([(2,3)], dtype=[('bar', 'i8'), ('baz', 'i8')])
v4 = np.array([(2,)], dtype=[('bar', 'i8')])
v5 = np.array([(2,3)], dtype=[('foo', 'f8'), ('bar', 'f8')])
w = arr.view({'names': ['bar'], 'formats': ['i8'], 'offsets': [8]})
ans = np.array([(2,3),(2,3)], dtype=dt)
assert_equal(testassign(arr, v1), ans)
assert_equal(testassign(arr, v2), ans)
assert_equal(testassign(arr, v3), ans)
assert_raises(ValueError, lambda: testassign(arr, v4))
assert_equal(testassign(arr, v5), ans)
w[:] = 4
assert_equal(arr, np.array([(1,4),(1,4)], dtype=dt))
# test field-reordering, assignment by position, and self-assignment
a = np.array([(1,2,3)],
dtype=[('foo', 'i8'), ('bar', 'i8'), ('baz', 'f4')])
a[['foo', 'bar']] = a[['bar', 'foo']]
assert_equal(a[0].item(), (2,1,3))
# test that this works even for 'simple_unaligned' structs
# (ie, that PyArray_EquivTypes cares about field order too)
a = np.array([(1,2)], dtype=[('a', 'i4'), ('b', 'i4')])
a[['a', 'b']] = a[['b', 'a']]
assert_equal(a[0].item(), (2,1))
def test_scalar_assignment(self):
with assert_raises(ValueError):
arr = np.arange(25).reshape(5, 5)
arr.itemset(3)
def test_structuredscalar_indexing(self):
# test gh-7262
x = np.empty(shape=1, dtype="(2)3S,(2)3U")
assert_equal(x[["f0","f1"]][0], x[0][["f0","f1"]])
assert_equal(x[0], x[0][()])
def test_multiindex_titles(self):
a = np.zeros(4, dtype=[(('a', 'b'), 'i'), ('c', 'i'), ('d', 'i')])
assert_raises(KeyError, lambda : a[['a','c']])
assert_raises(KeyError, lambda : a[['a','a']])
assert_raises(ValueError, lambda : a[['b','b']]) # field exists, but repeated
a[['b','c']] # no exception
class TestBool:
def test_test_interning(self):
a0 = np.bool_(0)
b0 = np.bool_(False)
assert_(a0 is b0)
a1 = np.bool_(1)
b1 = np.bool_(True)
assert_(a1 is b1)
assert_(np.array([True])[0] is a1)
assert_(np.array(True)[()] is a1)
def test_sum(self):
d = np.ones(101, dtype=bool)
assert_equal(d.sum(), d.size)
assert_equal(d[::2].sum(), d[::2].size)
assert_equal(d[::-2].sum(), d[::-2].size)
d = np.frombuffer(b'\xff\xff' * 100, dtype=bool)
assert_equal(d.sum(), d.size)
assert_equal(d[::2].sum(), d[::2].size)
assert_equal(d[::-2].sum(), d[::-2].size)
def check_count_nonzero(self, power, length):
powers = [2 ** i for i in range(length)]
for i in range(2**power):
l = [(i & x) != 0 for x in powers]
a = np.array(l, dtype=bool)
c = builtins.sum(l)
assert_equal(np.count_nonzero(a), c)
av = a.view(np.uint8)
av *= 3
assert_equal(np.count_nonzero(a), c)
av *= 4
assert_equal(np.count_nonzero(a), c)
av[av != 0] = 0xFF
assert_equal(np.count_nonzero(a), c)
def test_count_nonzero(self):
# check all 12 bit combinations in a length 17 array
# covers most cases of the 16 byte unrolled code
self.check_count_nonzero(12, 17)
@pytest.mark.slow
def test_count_nonzero_all(self):
# check all combinations in a length 17 array
# covers all cases of the 16 byte unrolled code
self.check_count_nonzero(17, 17)
def test_count_nonzero_unaligned(self):
# prevent mistakes as e.g. gh-4060
for o in range(7):
a = np.zeros((18,), dtype=bool)[o+1:]
a[:o] = True
assert_equal(np.count_nonzero(a), builtins.sum(a.tolist()))
a = np.ones((18,), dtype=bool)[o+1:]
a[:o] = False
assert_equal(np.count_nonzero(a), builtins.sum(a.tolist()))
def _test_cast_from_flexible(self, dtype):
# empty string -> false
for n in range(3):
v = np.array(b'', (dtype, n))
assert_equal(bool(v), False)
assert_equal(bool(v[()]), False)
assert_equal(v.astype(bool), False)
assert_(isinstance(v.astype(bool), np.ndarray))
assert_(v[()].astype(bool) is np.False_)
# anything else -> true
for n in range(1, 4):
for val in [b'a', b'0', b' ']:
v = np.array(val, (dtype, n))
assert_equal(bool(v), True)
assert_equal(bool(v[()]), True)
assert_equal(v.astype(bool), True)
assert_(isinstance(v.astype(bool), np.ndarray))
assert_(v[()].astype(bool) is np.True_)
def test_cast_from_void(self):
self._test_cast_from_flexible(np.void)
@pytest.mark.xfail(reason="See gh-9847")
def test_cast_from_unicode(self):
self._test_cast_from_flexible(np.unicode_)
@pytest.mark.xfail(reason="See gh-9847")
def test_cast_from_bytes(self):
self._test_cast_from_flexible(np.bytes_)
class TestZeroSizeFlexible:
@staticmethod
def _zeros(shape, dtype=str):
dtype = np.dtype(dtype)
if dtype == np.void:
return np.zeros(shape, dtype=(dtype, 0))
# not constructable directly
dtype = np.dtype([('x', dtype, 0)])
return np.zeros(shape, dtype=dtype)['x']
def test_create(self):
zs = self._zeros(10, bytes)
assert_equal(zs.itemsize, 0)
zs = self._zeros(10, np.void)
assert_equal(zs.itemsize, 0)
zs = self._zeros(10, str)
assert_equal(zs.itemsize, 0)
def _test_sort_partition(self, name, kinds, **kwargs):
# Previously, these would all hang
for dt in [bytes, np.void, str]:
zs = self._zeros(10, dt)
sort_method = getattr(zs, name)
sort_func = getattr(np, name)
for kind in kinds:
sort_method(kind=kind, **kwargs)
sort_func(zs, kind=kind, **kwargs)
def test_sort(self):
self._test_sort_partition('sort', kinds='qhs')
def test_argsort(self):
self._test_sort_partition('argsort', kinds='qhs')
def test_partition(self):
self._test_sort_partition('partition', kinds=['introselect'], kth=2)
def test_argpartition(self):
self._test_sort_partition('argpartition', kinds=['introselect'], kth=2)
def test_resize(self):
# previously an error
for dt in [bytes, np.void, str]:
zs = self._zeros(10, dt)
zs.resize(25)
zs.resize((10, 10))
def test_view(self):
for dt in [bytes, np.void, str]:
zs = self._zeros(10, dt)
# viewing as itself should be allowed
assert_equal(zs.view(dt).dtype, np.dtype(dt))
# viewing as any non-empty type gives an empty result
assert_equal(zs.view((dt, 1)).shape, (0,))
def test_dumps(self):
zs = self._zeros(10, int)
assert_equal(zs, pickle.loads(zs.dumps()))
def test_pickle(self):
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
for dt in [bytes, np.void, str]:
zs = self._zeros(10, dt)
p = pickle.dumps(zs, protocol=proto)
zs2 = pickle.loads(p)
assert_equal(zs.dtype, zs2.dtype)
@pytest.mark.skipif(pickle.HIGHEST_PROTOCOL < 5,
reason="requires pickle protocol 5")
def test_pickle_with_buffercallback(self):
array = np.arange(10)
buffers = []
bytes_string = pickle.dumps(array, buffer_callback=buffers.append,
protocol=5)
array_from_buffer = pickle.loads(bytes_string, buffers=buffers)
# when using pickle protocol 5 with buffer callbacks,
# array_from_buffer is reconstructed from a buffer holding a view
# to the initial array's data, so modifying an element in array
# should modify it in array_from_buffer too.
array[0] = -1
assert array_from_buffer[0] == -1, array_from_buffer[0]
class TestMethods:
sort_kinds = ['quicksort', 'heapsort', 'stable']
def test_compress(self):
tgt = [[5, 6, 7, 8, 9]]
arr = np.arange(10).reshape(2, 5)
out = arr.compress([0, 1], axis=0)
assert_equal(out, tgt)
tgt = [[1, 3], [6, 8]]
out = arr.compress([0, 1, 0, 1, 0], axis=1)
assert_equal(out, tgt)
tgt = [[1], [6]]
arr = np.arange(10).reshape(2, 5)
out = arr.compress([0, 1], axis=1)
assert_equal(out, tgt)
arr = np.arange(10).reshape(2, 5)
out = arr.compress([0, 1])
assert_equal(out, 1)
def test_choose(self):
x = 2*np.ones((3,), dtype=int)
y = 3*np.ones((3,), dtype=int)
x2 = 2*np.ones((2, 3), dtype=int)
y2 = 3*np.ones((2, 3), dtype=int)
ind = np.array([0, 0, 1])
A = ind.choose((x, y))
assert_equal(A, [2, 2, 3])
A = ind.choose((x2, y2))
assert_equal(A, [[2, 2, 3], [2, 2, 3]])
A = ind.choose((x, y2))
assert_equal(A, [[2, 2, 3], [2, 2, 3]])
oned = np.ones(1)
# gh-12031, caused SEGFAULT
assert_raises(TypeError, oned.choose,np.void(0), [oned])
# gh-6272 check overlap on out
x = np.arange(5)
y = np.choose([0,0,0], [x[:3], x[:3], x[:3]], out=x[1:4], mode='wrap')
assert_equal(y, np.array([0, 1, 2]))
def test_prod(self):
ba = [1, 2, 10, 11, 6, 5, 4]
ba2 = [[1, 2, 3, 4], [5, 6, 7, 9], [10, 3, 4, 5]]
for ctype in [np.int16, np.uint16, np.int32, np.uint32,
np.float32, np.float64, np.complex64, np.complex128]:
a = np.array(ba, ctype)
a2 = np.array(ba2, ctype)
if ctype in ['1', 'b']:
assert_raises(ArithmeticError, a.prod)
assert_raises(ArithmeticError, a2.prod, axis=1)
else:
assert_equal(a.prod(axis=0), 26400)
assert_array_equal(a2.prod(axis=0),
np.array([50, 36, 84, 180], ctype))
assert_array_equal(a2.prod(axis=-1),
np.array([24, 1890, 600], ctype))
def test_repeat(self):
m = np.array([1, 2, 3, 4, 5, 6])
m_rect = m.reshape((2, 3))
A = m.repeat([1, 3, 2, 1, 1, 2])
assert_equal(A, [1, 2, 2, 2, 3,
3, 4, 5, 6, 6])
A = m.repeat(2)
assert_equal(A, [1, 1, 2, 2, 3, 3,
4, 4, 5, 5, 6, 6])
A = m_rect.repeat([2, 1], axis=0)
assert_equal(A, [[1, 2, 3],
[1, 2, 3],
[4, 5, 6]])
A = m_rect.repeat([1, 3, 2], axis=1)
assert_equal(A, [[1, 2, 2, 2, 3, 3],
[4, 5, 5, 5, 6, 6]])
A = m_rect.repeat(2, axis=0)
assert_equal(A, [[1, 2, 3],
[1, 2, 3],
[4, 5, 6],
[4, 5, 6]])
A = m_rect.repeat(2, axis=1)
assert_equal(A, [[1, 1, 2, 2, 3, 3],
[4, 4, 5, 5, 6, 6]])
def test_reshape(self):
arr = np.array([[1, 2, 3], [4, 5, 6], [7, 8, 9], [10, 11, 12]])
tgt = [[1, 2, 3, 4, 5, 6], [7, 8, 9, 10, 11, 12]]
assert_equal(arr.reshape(2, 6), tgt)
tgt = [[1, 2, 3, 4], [5, 6, 7, 8], [9, 10, 11, 12]]
assert_equal(arr.reshape(3, 4), tgt)
tgt = [[1, 10, 8, 6], [4, 2, 11, 9], [7, 5, 3, 12]]
assert_equal(arr.reshape((3, 4), order='F'), tgt)
tgt = [[1, 4, 7, 10], [2, 5, 8, 11], [3, 6, 9, 12]]
assert_equal(arr.T.reshape((3, 4), order='C'), tgt)
def test_round(self):
def check_round(arr, expected, *round_args):
assert_equal(arr.round(*round_args), expected)
# With output array
out = np.zeros_like(arr)
res = arr.round(*round_args, out=out)
assert_equal(out, expected)
assert_equal(out, res)
check_round(np.array([1.2, 1.5]), [1, 2])
check_round(np.array(1.5), 2)
check_round(np.array([12.2, 15.5]), [10, 20], -1)
check_round(np.array([12.15, 15.51]), [12.2, 15.5], 1)
# Complex rounding
check_round(np.array([4.5 + 1.5j]), [4 + 2j])
check_round(np.array([12.5 + 15.5j]), [10 + 20j], -1)
def test_squeeze(self):
a = np.array([[[1], [2], [3]]])
assert_equal(a.squeeze(), [1, 2, 3])
assert_equal(a.squeeze(axis=(0,)), [[1], [2], [3]])
assert_raises(ValueError, a.squeeze, axis=(1,))
assert_equal(a.squeeze(axis=(2,)), [[1, 2, 3]])
def test_transpose(self):
a = np.array([[1, 2], [3, 4]])
assert_equal(a.transpose(), [[1, 3], [2, 4]])
assert_raises(ValueError, lambda: a.transpose(0))
assert_raises(ValueError, lambda: a.transpose(0, 0))
assert_raises(ValueError, lambda: a.transpose(0, 1, 2))
def test_sort(self):
# test ordering for floats and complex containing nans. It is only
# necessary to check the less-than comparison, so sorts that
# only follow the insertion sort path are sufficient. We only
# test doubles and complex doubles as the logic is the same.
# check doubles
msg = "Test real sort order with nans"
a = np.array([np.nan, 1, 0])
b = np.sort(a)
assert_equal(b, a[::-1], msg)
# check complex
msg = "Test complex sort order with nans"
a = np.zeros(9, dtype=np.complex128)
a.real += [np.nan, np.nan, np.nan, 1, 0, 1, 1, 0, 0]
a.imag += [np.nan, 1, 0, np.nan, np.nan, 1, 0, 1, 0]
b = np.sort(a)
assert_equal(b, a[::-1], msg)
# all c scalar sorts use the same code with different types
# so it suffices to run a quick check with one type. The number
# of sorted items must be greater than ~50 to check the actual
# algorithm because quick and merge sort fall over to insertion
# sort for small arrays.
@pytest.mark.parametrize('dtype', [np.uint8, np.uint16, np.uint32, np.uint64,
np.float16, np.float32, np.float64,
np.longdouble])
def test_sort_unsigned(self, dtype):
a = np.arange(101, dtype=dtype)
b = a[::-1].copy()
for kind in self.sort_kinds:
msg = "scalar sort, kind=%s" % kind
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
c = b.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
@pytest.mark.parametrize('dtype',
[np.int8, np.int16, np.int32, np.int64, np.float16,
np.float32, np.float64, np.longdouble])
def test_sort_signed(self, dtype):
a = np.arange(-50, 51, dtype=dtype)
b = a[::-1].copy()
for kind in self.sort_kinds:
msg = "scalar sort, kind=%s" % (kind)
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
c = b.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
@pytest.mark.parametrize('dtype', [np.float32, np.float64, np.longdouble])
@pytest.mark.parametrize('part', ['real', 'imag'])
def test_sort_complex(self, part, dtype):
# test complex sorts. These use the same code as the scalars
# but the compare function differs.
cdtype = {
np.single: np.csingle,
np.double: np.cdouble,
np.longdouble: np.clongdouble,
}[dtype]
a = np.arange(-50, 51, dtype=dtype)
b = a[::-1].copy()
ai = (a * (1+1j)).astype(cdtype)
bi = (b * (1+1j)).astype(cdtype)
setattr(ai, part, 1)
setattr(bi, part, 1)
for kind in self.sort_kinds:
msg = "complex sort, %s part == 1, kind=%s" % (part, kind)
c = ai.copy()
c.sort(kind=kind)
assert_equal(c, ai, msg)
c = bi.copy()
c.sort(kind=kind)
assert_equal(c, ai, msg)
def test_sort_complex_byte_swapping(self):
# test sorting of complex arrays requiring byte-swapping, gh-5441
for endianness in '<>':
for dt in np.typecodes['Complex']:
arr = np.array([1+3.j, 2+2.j, 3+1.j], dtype=endianness + dt)
c = arr.copy()
c.sort()
msg = 'byte-swapped complex sort, dtype={0}'.format(dt)
assert_equal(c, arr, msg)
@pytest.mark.parametrize('dtype', [np.bytes_, np.unicode_])
def test_sort_string(self, dtype):
# np.array will perform the encoding to bytes for us in the bytes test
a = np.array(['aaaaaaaa' + chr(i) for i in range(101)], dtype=dtype)
b = a[::-1].copy()
for kind in self.sort_kinds:
msg = "kind=%s" % kind
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
c = b.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
def test_sort_object(self):
# test object array sorts.
a = np.empty((101,), dtype=object)
a[:] = list(range(101))
b = a[::-1]
for kind in ['q', 'h', 'm']:
msg = "kind=%s" % kind
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
c = b.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
def test_sort_structured(self):
# test record array sorts.
dt = np.dtype([('f', float), ('i', int)])
a = np.array([(i, i) for i in range(101)], dtype=dt)
b = a[::-1]
for kind in ['q', 'h', 'm']:
msg = "kind=%s" % kind
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
c = b.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
@pytest.mark.parametrize('dtype', ['datetime64[D]', 'timedelta64[D]'])
def test_sort_time(self, dtype):
# test datetime64 and timedelta64 sorts.
a = np.arange(0, 101, dtype=dtype)
b = a[::-1]
for kind in ['q', 'h', 'm']:
msg = "kind=%s" % kind
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
c = b.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
def test_sort_axis(self):
# check axis handling. This should be the same for all type
# specific sorts, so we only check it for one type and one kind
a = np.array([[3, 2], [1, 0]])
b = np.array([[1, 0], [3, 2]])
c = np.array([[2, 3], [0, 1]])
d = a.copy()
d.sort(axis=0)
assert_equal(d, b, "test sort with axis=0")
d = a.copy()
d.sort(axis=1)
assert_equal(d, c, "test sort with axis=1")
d = a.copy()
d.sort()
assert_equal(d, c, "test sort with default axis")
def test_sort_size_0(self):
# check axis handling for multidimensional empty arrays
a = np.array([])
a.shape = (3, 2, 1, 0)
for axis in range(-a.ndim, a.ndim):
msg = 'test empty array sort with axis={0}'.format(axis)
assert_equal(np.sort(a, axis=axis), a, msg)
msg = 'test empty array sort with axis=None'
assert_equal(np.sort(a, axis=None), a.ravel(), msg)
def test_sort_bad_ordering(self):
# test generic class with bogus ordering,
# should not segfault.
class Boom:
def __lt__(self, other):
return True
a = np.array([Boom()] * 100, dtype=object)
for kind in self.sort_kinds:
msg = "kind=%s" % kind
c = a.copy()
c.sort(kind=kind)
assert_equal(c, a, msg)
def test_void_sort(self):
# gh-8210 - previously segfaulted
for i in range(4):
rand = np.random.randint(256, size=4000, dtype=np.uint8)
arr = rand.view('V4')
arr[::-1].sort()
dt = np.dtype([('val', 'i4', (1,))])
for i in range(4):
rand = np.random.randint(256, size=4000, dtype=np.uint8)
arr = rand.view(dt)
arr[::-1].sort()
def test_sort_raises(self):
#gh-9404
arr = np.array([0, datetime.now(), 1], dtype=object)
for kind in self.sort_kinds:
assert_raises(TypeError, arr.sort, kind=kind)
#gh-3879
class Raiser:
def raises_anything(*args, **kwargs):
raise TypeError("SOMETHING ERRORED")
__eq__ = __ne__ = __lt__ = __gt__ = __ge__ = __le__ = raises_anything
arr = np.array([[Raiser(), n] for n in range(10)]).reshape(-1)
np.random.shuffle(arr)
for kind in self.sort_kinds:
assert_raises(TypeError, arr.sort, kind=kind)
def test_sort_degraded(self):
# test degraded dataset would take minutes to run with normal qsort
d = np.arange(1000000)
do = d.copy()
x = d
# create a median of 3 killer where each median is the sorted second
# last element of the quicksort partition
while x.size > 3:
mid = x.size // 2
x[mid], x[-2] = x[-2], x[mid]
x = x[:-2]
assert_equal(np.sort(d), do)
assert_equal(d[np.argsort(d)], do)
def test_copy(self):
def assert_fortran(arr):
assert_(arr.flags.fortran)
assert_(arr.flags.f_contiguous)
assert_(not arr.flags.c_contiguous)
def assert_c(arr):
assert_(not arr.flags.fortran)
assert_(not arr.flags.f_contiguous)
assert_(arr.flags.c_contiguous)
a = np.empty((2, 2), order='F')
# Test copying a Fortran array
assert_c(a.copy())
assert_c(a.copy('C'))
assert_fortran(a.copy('F'))
assert_fortran(a.copy('A'))
# Now test starting with a C array.
a = np.empty((2, 2), order='C')
assert_c(a.copy())
assert_c(a.copy('C'))
assert_fortran(a.copy('F'))
assert_c(a.copy('A'))
def test_sort_order(self):
# Test sorting an array with fields
x1 = np.array([21, 32, 14])
x2 = np.array(['my', 'first', 'name'])
x3 = np.array([3.1, 4.5, 6.2])
r = np.rec.fromarrays([x1, x2, x3], names='id,word,number')
r.sort(order=['id'])
assert_equal(r.id, np.array([14, 21, 32]))
assert_equal(r.word, np.array(['name', 'my', 'first']))
assert_equal(r.number, np.array([6.2, 3.1, 4.5]))
r.sort(order=['word'])
assert_equal(r.id, np.array([32, 21, 14]))
assert_equal(r.word, np.array(['first', 'my', 'name']))
assert_equal(r.number, np.array([4.5, 3.1, 6.2]))
r.sort(order=['number'])
assert_equal(r.id, np.array([21, 32, 14]))
assert_equal(r.word, np.array(['my', 'first', 'name']))
assert_equal(r.number, np.array([3.1, 4.5, 6.2]))
assert_raises_regex(ValueError, 'duplicate',
lambda: r.sort(order=['id', 'id']))
if sys.byteorder == 'little':
strtype = '>i2'
else:
strtype = '<i2'
mydtype = [('name', strchar + '5'), ('col2', strtype)]
r = np.array([('a', 1), ('b', 255), ('c', 3), ('d', 258)],
dtype=mydtype)
r.sort(order='col2')
assert_equal(r['col2'], [1, 3, 255, 258])
assert_equal(r, np.array([('a', 1), ('c', 3), ('b', 255), ('d', 258)],
dtype=mydtype))
def test_argsort(self):
# all c scalar argsorts use the same code with different types
# so it suffices to run a quick check with one type. The number
# of sorted items must be greater than ~50 to check the actual
# algorithm because quick and merge sort fall over to insertion
# sort for small arrays.
for dtype in [np.int32, np.uint32, np.float32]:
a = np.arange(101, dtype=dtype)
b = a[::-1].copy()
for kind in self.sort_kinds:
msg = "scalar argsort, kind=%s, dtype=%s" % (kind, dtype)
assert_equal(a.copy().argsort(kind=kind), a, msg)
assert_equal(b.copy().argsort(kind=kind), b, msg)
# test complex argsorts. These use the same code as the scalars
# but the compare function differs.
ai = a*1j + 1
bi = b*1j + 1
for kind in self.sort_kinds:
msg = "complex argsort, kind=%s" % kind
assert_equal(ai.copy().argsort(kind=kind), a, msg)
assert_equal(bi.copy().argsort(kind=kind), b, msg)
ai = a + 1j
bi = b + 1j
for kind in self.sort_kinds:
msg = "complex argsort, kind=%s" % kind
assert_equal(ai.copy().argsort(kind=kind), a, msg)
assert_equal(bi.copy().argsort(kind=kind), b, msg)
# test argsort of complex arrays requiring byte-swapping, gh-5441
for endianness in '<>':
for dt in np.typecodes['Complex']:
arr = np.array([1+3.j, 2+2.j, 3+1.j], dtype=endianness + dt)
msg = 'byte-swapped complex argsort, dtype={0}'.format(dt)
assert_equal(arr.argsort(),
np.arange(len(arr), dtype=np.intp), msg)
# test string argsorts.
s = 'aaaaaaaa'
a = np.array([s + chr(i) for i in range(101)])
b = a[::-1].copy()
r = np.arange(101)
rr = r[::-1]
for kind in self.sort_kinds:
msg = "string argsort, kind=%s" % kind
assert_equal(a.copy().argsort(kind=kind), r, msg)
assert_equal(b.copy().argsort(kind=kind), rr, msg)
# test unicode argsorts.
s = 'aaaaaaaa'
a = np.array([s + chr(i) for i in range(101)], dtype=np.unicode_)
b = a[::-1]
r = np.arange(101)
rr = r[::-1]
for kind in self.sort_kinds:
msg = "unicode argsort, kind=%s" % kind
assert_equal(a.copy().argsort(kind=kind), r, msg)
assert_equal(b.copy().argsort(kind=kind), rr, msg)
# test object array argsorts.
a = np.empty((101,), dtype=object)
a[:] = list(range(101))
b = a[::-1]
r = np.arange(101)
rr = r[::-1]
for kind in self.sort_kinds:
msg = "object argsort, kind=%s" % kind
assert_equal(a.copy().argsort(kind=kind), r, msg)
assert_equal(b.copy().argsort(kind=kind), rr, msg)
# test structured array argsorts.
dt = np.dtype([('f', float), ('i', int)])
a = np.array([(i, i) for i in range(101)], dtype=dt)
b = a[::-1]
r = np.arange(101)
rr = r[::-1]
for kind in self.sort_kinds:
msg = "structured array argsort, kind=%s" % kind
assert_equal(a.copy().argsort(kind=kind), r, msg)
assert_equal(b.copy().argsort(kind=kind), rr, msg)
# test datetime64 argsorts.
a = np.arange(0, 101, dtype='datetime64[D]')
b = a[::-1]
r = np.arange(101)
rr = r[::-1]
for kind in ['q', 'h', 'm']:
msg = "datetime64 argsort, kind=%s" % kind
assert_equal(a.copy().argsort(kind=kind), r, msg)
assert_equal(b.copy().argsort(kind=kind), rr, msg)
# test timedelta64 argsorts.
a = np.arange(0, 101, dtype='timedelta64[D]')
b = a[::-1]
r = np.arange(101)
rr = r[::-1]
for kind in ['q', 'h', 'm']:
msg = "timedelta64 argsort, kind=%s" % kind
assert_equal(a.copy().argsort(kind=kind), r, msg)
assert_equal(b.copy().argsort(kind=kind), rr, msg)
# check axis handling. This should be the same for all type
# specific argsorts, so we only check it for one type and one kind
a = np.array([[3, 2], [1, 0]])
b = np.array([[1, 1], [0, 0]])
c = np.array([[1, 0], [1, 0]])
assert_equal(a.copy().argsort(axis=0), b)
assert_equal(a.copy().argsort(axis=1), c)
assert_equal(a.copy().argsort(), c)
# check axis handling for multidimensional empty arrays
a = np.array([])
a.shape = (3, 2, 1, 0)
for axis in range(-a.ndim, a.ndim):
msg = 'test empty array argsort with axis={0}'.format(axis)
assert_equal(np.argsort(a, axis=axis),
np.zeros_like(a, dtype=np.intp), msg)
msg = 'test empty array argsort with axis=None'
assert_equal(np.argsort(a, axis=None),
np.zeros_like(a.ravel(), dtype=np.intp), msg)
# check that stable argsorts are stable
r = np.arange(100)
# scalars
a = np.zeros(100)
assert_equal(a.argsort(kind='m'), r)
# complex
a = np.zeros(100, dtype=complex)
assert_equal(a.argsort(kind='m'), r)
# string
a = np.array(['aaaaaaaaa' for i in range(100)])
assert_equal(a.argsort(kind='m'), r)
# unicode
a = np.array(['aaaaaaaaa' for i in range(100)], dtype=np.unicode_)
assert_equal(a.argsort(kind='m'), r)
def test_sort_unicode_kind(self):
d = np.arange(10)
k = b'\xc3\xa4'.decode("UTF8")
assert_raises(ValueError, d.sort, kind=k)
assert_raises(ValueError, d.argsort, kind=k)
def test_searchsorted(self):
# test for floats and complex containing nans. The logic is the
# same for all float types so only test double types for now.
# The search sorted routines use the compare functions for the
# array type, so this checks if that is consistent with the sort
# order.
# check double
a = np.array([0, 1, np.nan])
msg = "Test real searchsorted with nans, side='l'"
b = a.searchsorted(a, side='l')
assert_equal(b, np.arange(3), msg)
msg = "Test real searchsorted with nans, side='r'"
b = a.searchsorted(a, side='r')
assert_equal(b, np.arange(1, 4), msg)
# check keyword arguments
a.searchsorted(v=1)
# check double complex
a = np.zeros(9, dtype=np.complex128)
a.real += [0, 0, 1, 1, 0, 1, np.nan, np.nan, np.nan]
a.imag += [0, 1, 0, 1, np.nan, np.nan, 0, 1, np.nan]
msg = "Test complex searchsorted with nans, side='l'"
b = a.searchsorted(a, side='l')
assert_equal(b, np.arange(9), msg)
msg = "Test complex searchsorted with nans, side='r'"
b = a.searchsorted(a, side='r')
assert_equal(b, np.arange(1, 10), msg)
msg = "Test searchsorted with little endian, side='l'"
a = np.array([0, 128], dtype='<i4')
b = a.searchsorted(np.array(128, dtype='<i4'))
assert_equal(b, 1, msg)
msg = "Test searchsorted with big endian, side='l'"
a = np.array([0, 128], dtype='>i4')
b = a.searchsorted(np.array(128, dtype='>i4'))
assert_equal(b, 1, msg)
# Check 0 elements
a = np.ones(0)
b = a.searchsorted([0, 1, 2], 'l')
assert_equal(b, [0, 0, 0])
b = a.searchsorted([0, 1, 2], 'r')
assert_equal(b, [0, 0, 0])
a = np.ones(1)
# Check 1 element
b = a.searchsorted([0, 1, 2], 'l')
assert_equal(b, [0, 0, 1])
b = a.searchsorted([0, 1, 2], 'r')
assert_equal(b, [0, 1, 1])
# Check all elements equal
a = np.ones(2)
b = a.searchsorted([0, 1, 2], 'l')
assert_equal(b, [0, 0, 2])
b = a.searchsorted([0, 1, 2], 'r')
assert_equal(b, [0, 2, 2])
# Test searching unaligned array
a = np.arange(10)
aligned = np.empty(a.itemsize * a.size + 1, 'uint8')
unaligned = aligned[1:].view(a.dtype)
unaligned[:] = a
# Test searching unaligned array
b = unaligned.searchsorted(a, 'l')
assert_equal(b, a)
b = unaligned.searchsorted(a, 'r')
assert_equal(b, a + 1)
# Test searching for unaligned keys
b = a.searchsorted(unaligned, 'l')
assert_equal(b, a)
b = a.searchsorted(unaligned, 'r')
assert_equal(b, a + 1)
# Test smart resetting of binsearch indices
a = np.arange(5)
b = a.searchsorted([6, 5, 4], 'l')
assert_equal(b, [5, 5, 4])
b = a.searchsorted([6, 5, 4], 'r')
assert_equal(b, [5, 5, 5])
# Test all type specific binary search functions
types = ''.join((np.typecodes['AllInteger'], np.typecodes['AllFloat'],
np.typecodes['Datetime'], '?O'))
for dt in types:
if dt == 'M':
dt = 'M8[D]'
if dt == '?':
a = np.arange(2, dtype=dt)
out = np.arange(2)
else:
a = np.arange(0, 5, dtype=dt)
out = np.arange(5)
b = a.searchsorted(a, 'l')
assert_equal(b, out)
b = a.searchsorted(a, 'r')
assert_equal(b, out + 1)
# Test empty array, use a fresh array to get warnings in
# valgrind if access happens.
e = np.ndarray(shape=0, buffer=b'', dtype=dt)
b = e.searchsorted(a, 'l')
assert_array_equal(b, np.zeros(len(a), dtype=np.intp))
b = a.searchsorted(e, 'l')
assert_array_equal(b, np.zeros(0, dtype=np.intp))
def test_searchsorted_unicode(self):
# Test searchsorted on unicode strings.
# 1.6.1 contained a string length miscalculation in
# arraytypes.c.src:UNICODE_compare() which manifested as
# incorrect/inconsistent results from searchsorted.
a = np.array(['P:\\20x_dapi_cy3\\20x_dapi_cy3_20100185_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100186_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100187_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100189_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100190_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100191_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100192_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100193_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100194_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100195_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100196_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100197_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100198_1',
'P:\\20x_dapi_cy3\\20x_dapi_cy3_20100199_1'],
dtype=np.unicode_)
ind = np.arange(len(a))
assert_equal([a.searchsorted(v, 'left') for v in a], ind)
assert_equal([a.searchsorted(v, 'right') for v in a], ind + 1)
assert_equal([a.searchsorted(a[i], 'left') for i in ind], ind)
assert_equal([a.searchsorted(a[i], 'right') for i in ind], ind + 1)
def test_searchsorted_with_invalid_sorter(self):
a = np.array([5, 2, 1, 3, 4])
s = np.argsort(a)
assert_raises(TypeError, np.searchsorted, a, 0,
sorter=np.array((1, (2, 3)), dtype=object))
assert_raises(TypeError, np.searchsorted, a, 0, sorter=[1.1])
assert_raises(ValueError, np.searchsorted, a, 0, sorter=[1, 2, 3, 4])
assert_raises(ValueError, np.searchsorted, a, 0, sorter=[1, 2, 3, 4, 5, 6])
# bounds check
assert_raises(ValueError, np.searchsorted, a, 4, sorter=[0, 1, 2, 3, 5])
assert_raises(ValueError, np.searchsorted, a, 0, sorter=[-1, 0, 1, 2, 3])
assert_raises(ValueError, np.searchsorted, a, 0, sorter=[4, 0, -1, 2, 3])
def test_searchsorted_with_sorter(self):
a = np.random.rand(300)
s = a.argsort()
b = np.sort(a)
k = np.linspace(0, 1, 20)
assert_equal(b.searchsorted(k), a.searchsorted(k, sorter=s))
a = np.array([0, 1, 2, 3, 5]*20)
s = a.argsort()
k = [0, 1, 2, 3, 5]
expected = [0, 20, 40, 60, 80]
assert_equal(a.searchsorted(k, side='l', sorter=s), expected)
expected = [20, 40, 60, 80, 100]
assert_equal(a.searchsorted(k, side='r', sorter=s), expected)
# Test searching unaligned array
keys = np.arange(10)
a = keys.copy()
np.random.shuffle(s)
s = a.argsort()
aligned = np.empty(a.itemsize * a.size + 1, 'uint8')
unaligned = aligned[1:].view(a.dtype)
# Test searching unaligned array
unaligned[:] = a
b = unaligned.searchsorted(keys, 'l', s)
assert_equal(b, keys)
b = unaligned.searchsorted(keys, 'r', s)
assert_equal(b, keys + 1)
# Test searching for unaligned keys
unaligned[:] = keys
b = a.searchsorted(unaligned, 'l', s)
assert_equal(b, keys)
b = a.searchsorted(unaligned, 'r', s)
assert_equal(b, keys + 1)
# Test all type specific indirect binary search functions
types = ''.join((np.typecodes['AllInteger'], np.typecodes['AllFloat'],
np.typecodes['Datetime'], '?O'))
for dt in types:
if dt == 'M':
dt = 'M8[D]'
if dt == '?':
a = np.array([1, 0], dtype=dt)
# We want the sorter array to be of a type that is different
# from np.intp in all platforms, to check for #4698
s = np.array([1, 0], dtype=np.int16)
out = np.array([1, 0])
else:
a = np.array([3, 4, 1, 2, 0], dtype=dt)
# We want the sorter array to be of a type that is different
# from np.intp in all platforms, to check for #4698
s = np.array([4, 2, 3, 0, 1], dtype=np.int16)
out = np.array([3, 4, 1, 2, 0], dtype=np.intp)
b = a.searchsorted(a, 'l', s)
assert_equal(b, out)
b = a.searchsorted(a, 'r', s)
assert_equal(b, out + 1)
# Test empty array, use a fresh array to get warnings in
# valgrind if access happens.
e = np.ndarray(shape=0, buffer=b'', dtype=dt)
b = e.searchsorted(a, 'l', s[:0])
assert_array_equal(b, np.zeros(len(a), dtype=np.intp))
b = a.searchsorted(e, 'l', s)
assert_array_equal(b, np.zeros(0, dtype=np.intp))
# Test non-contiguous sorter array
a = np.array([3, 4, 1, 2, 0])
srt = np.empty((10,), dtype=np.intp)
srt[1::2] = -1
srt[::2] = [4, 2, 3, 0, 1]
s = srt[::2]
out = np.array([3, 4, 1, 2, 0], dtype=np.intp)
b = a.searchsorted(a, 'l', s)
assert_equal(b, out)
b = a.searchsorted(a, 'r', s)
assert_equal(b, out + 1)
def test_searchsorted_return_type(self):
# Functions returning indices should always return base ndarrays
class A(np.ndarray):
pass
a = np.arange(5).view(A)
b = np.arange(1, 3).view(A)
s = np.arange(5).view(A)
assert_(not isinstance(a.searchsorted(b, 'l'), A))
assert_(not isinstance(a.searchsorted(b, 'r'), A))
assert_(not isinstance(a.searchsorted(b, 'l', s), A))
assert_(not isinstance(a.searchsorted(b, 'r', s), A))
def test_argpartition_out_of_range(self):
# Test out of range values in kth raise an error, gh-5469
d = np.arange(10)
assert_raises(ValueError, d.argpartition, 10)
assert_raises(ValueError, d.argpartition, -11)
# Test also for generic type argpartition, which uses sorting
# and used to not bound check kth
d_obj = np.arange(10, dtype=object)
assert_raises(ValueError, d_obj.argpartition, 10)
assert_raises(ValueError, d_obj.argpartition, -11)
def test_partition_out_of_range(self):
# Test out of range values in kth raise an error, gh-5469
d = np.arange(10)
assert_raises(ValueError, d.partition, 10)
assert_raises(ValueError, d.partition, -11)
# Test also for generic type partition, which uses sorting
# and used to not bound check kth
d_obj = np.arange(10, dtype=object)
assert_raises(ValueError, d_obj.partition, 10)
assert_raises(ValueError, d_obj.partition, -11)
def test_argpartition_integer(self):
# Test non-integer values in kth raise an error/
d = np.arange(10)
assert_raises(TypeError, d.argpartition, 9.)
# Test also for generic type argpartition, which uses sorting
# and used to not bound check kth
d_obj = np.arange(10, dtype=object)
assert_raises(TypeError, d_obj.argpartition, 9.)
def test_partition_integer(self):
# Test out of range values in kth raise an error, gh-5469
d = np.arange(10)
assert_raises(TypeError, d.partition, 9.)
# Test also for generic type partition, which uses sorting
# and used to not bound check kth
d_obj = np.arange(10, dtype=object)
assert_raises(TypeError, d_obj.partition, 9.)
def test_partition_empty_array(self):
# check axis handling for multidimensional empty arrays
a = np.array([])
a.shape = (3, 2, 1, 0)
for axis in range(-a.ndim, a.ndim):
msg = 'test empty array partition with axis={0}'.format(axis)
assert_equal(np.partition(a, 0, axis=axis), a, msg)
msg = 'test empty array partition with axis=None'
assert_equal(np.partition(a, 0, axis=None), a.ravel(), msg)
def test_argpartition_empty_array(self):
# check axis handling for multidimensional empty arrays
a = np.array([])
a.shape = (3, 2, 1, 0)
for axis in range(-a.ndim, a.ndim):
msg = 'test empty array argpartition with axis={0}'.format(axis)
assert_equal(np.partition(a, 0, axis=axis),
np.zeros_like(a, dtype=np.intp), msg)
msg = 'test empty array argpartition with axis=None'
assert_equal(np.partition(a, 0, axis=None),
np.zeros_like(a.ravel(), dtype=np.intp), msg)
def test_partition(self):
d = np.arange(10)
assert_raises(TypeError, np.partition, d, 2, kind=1)
assert_raises(ValueError, np.partition, d, 2, kind="nonsense")
assert_raises(ValueError, np.argpartition, d, 2, kind="nonsense")
assert_raises(ValueError, d.partition, 2, axis=0, kind="nonsense")
assert_raises(ValueError, d.argpartition, 2, axis=0, kind="nonsense")
for k in ("introselect",):
d = np.array([])
assert_array_equal(np.partition(d, 0, kind=k), d)
assert_array_equal(np.argpartition(d, 0, kind=k), d)
d = np.ones(1)
assert_array_equal(np.partition(d, 0, kind=k)[0], d)
assert_array_equal(d[np.argpartition(d, 0, kind=k)],
np.partition(d, 0, kind=k))
# kth not modified
kth = np.array([30, 15, 5])
okth = kth.copy()
np.partition(np.arange(40), kth)
assert_array_equal(kth, okth)
for r in ([2, 1], [1, 2], [1, 1]):
d = np.array(r)
tgt = np.sort(d)
assert_array_equal(np.partition(d, 0, kind=k)[0], tgt[0])
assert_array_equal(np.partition(d, 1, kind=k)[1], tgt[1])
assert_array_equal(d[np.argpartition(d, 0, kind=k)],
np.partition(d, 0, kind=k))
assert_array_equal(d[np.argpartition(d, 1, kind=k)],
np.partition(d, 1, kind=k))
for i in range(d.size):
d[i:].partition(0, kind=k)
assert_array_equal(d, tgt)
for r in ([3, 2, 1], [1, 2, 3], [2, 1, 3], [2, 3, 1],
[1, 1, 1], [1, 2, 2], [2, 2, 1], [1, 2, 1]):
d = np.array(r)
tgt = np.sort(d)
assert_array_equal(np.partition(d, 0, kind=k)[0], tgt[0])
assert_array_equal(np.partition(d, 1, kind=k)[1], tgt[1])
assert_array_equal(np.partition(d, 2, kind=k)[2], tgt[2])
assert_array_equal(d[np.argpartition(d, 0, kind=k)],
np.partition(d, 0, kind=k))
assert_array_equal(d[np.argpartition(d, 1, kind=k)],
np.partition(d, 1, kind=k))
assert_array_equal(d[np.argpartition(d, 2, kind=k)],
np.partition(d, 2, kind=k))
for i in range(d.size):
d[i:].partition(0, kind=k)
assert_array_equal(d, tgt)
d = np.ones(50)
assert_array_equal(np.partition(d, 0, kind=k), d)
assert_array_equal(d[np.argpartition(d, 0, kind=k)],
np.partition(d, 0, kind=k))
# sorted
d = np.arange(49)
assert_equal(np.partition(d, 5, kind=k)[5], 5)
assert_equal(np.partition(d, 15, kind=k)[15], 15)
assert_array_equal(d[np.argpartition(d, 5, kind=k)],
np.partition(d, 5, kind=k))
assert_array_equal(d[np.argpartition(d, 15, kind=k)],
np.partition(d, 15, kind=k))
# rsorted
d = np.arange(47)[::-1]
assert_equal(np.partition(d, 6, kind=k)[6], 6)
assert_equal(np.partition(d, 16, kind=k)[16], 16)
assert_array_equal(d[np.argpartition(d, 6, kind=k)],
np.partition(d, 6, kind=k))
assert_array_equal(d[np.argpartition(d, 16, kind=k)],
np.partition(d, 16, kind=k))
assert_array_equal(np.partition(d, -6, kind=k),
np.partition(d, 41, kind=k))
assert_array_equal(np.partition(d, -16, kind=k),
np.partition(d, 31, kind=k))
assert_array_equal(d[np.argpartition(d, -6, kind=k)],
np.partition(d, 41, kind=k))
# median of 3 killer, O(n^2) on pure median 3 pivot quickselect
# exercises the median of median of 5 code used to keep O(n)
d = np.arange(1000000)
x = np.roll(d, d.size // 2)
mid = x.size // 2 + 1
assert_equal(np.partition(x, mid)[mid], mid)
d = np.arange(1000001)
x = np.roll(d, d.size // 2 + 1)
mid = x.size // 2 + 1
assert_equal(np.partition(x, mid)[mid], mid)
# max
d = np.ones(10)
d[1] = 4
assert_equal(np.partition(d, (2, -1))[-1], 4)
assert_equal(np.partition(d, (2, -1))[2], 1)
assert_equal(d[np.argpartition(d, (2, -1))][-1], 4)
assert_equal(d[np.argpartition(d, (2, -1))][2], 1)
d[1] = np.nan
assert_(np.isnan(d[np.argpartition(d, (2, -1))][-1]))
assert_(np.isnan(np.partition(d, (2, -1))[-1]))
# equal elements
d = np.arange(47) % 7
tgt = np.sort(np.arange(47) % 7)
np.random.shuffle(d)
for i in range(d.size):
assert_equal(np.partition(d, i, kind=k)[i], tgt[i])
assert_array_equal(d[np.argpartition(d, 6, kind=k)],
np.partition(d, 6, kind=k))
assert_array_equal(d[np.argpartition(d, 16, kind=k)],
np.partition(d, 16, kind=k))
for i in range(d.size):
d[i:].partition(0, kind=k)
assert_array_equal(d, tgt)
d = np.array([0, 1, 2, 3, 4, 5, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7,
7, 7, 7, 7, 7, 9])
kth = [0, 3, 19, 20]
assert_equal(np.partition(d, kth, kind=k)[kth], (0, 3, 7, 7))
assert_equal(d[np.argpartition(d, kth, kind=k)][kth], (0, 3, 7, 7))
d = np.array([2, 1])
d.partition(0, kind=k)
assert_raises(ValueError, d.partition, 2)
assert_raises(np.AxisError, d.partition, 3, axis=1)
assert_raises(ValueError, np.partition, d, 2)
assert_raises(np.AxisError, np.partition, d, 2, axis=1)
assert_raises(ValueError, d.argpartition, 2)
assert_raises(np.AxisError, d.argpartition, 3, axis=1)
assert_raises(ValueError, np.argpartition, d, 2)
assert_raises(np.AxisError, np.argpartition, d, 2, axis=1)
d = np.arange(10).reshape((2, 5))
d.partition(1, axis=0, kind=k)
d.partition(4, axis=1, kind=k)
np.partition(d, 1, axis=0, kind=k)
np.partition(d, 4, axis=1, kind=k)
np.partition(d, 1, axis=None, kind=k)
np.partition(d, 9, axis=None, kind=k)
d.argpartition(1, axis=0, kind=k)
d.argpartition(4, axis=1, kind=k)
np.argpartition(d, 1, axis=0, kind=k)
np.argpartition(d, 4, axis=1, kind=k)
np.argpartition(d, 1, axis=None, kind=k)
np.argpartition(d, 9, axis=None, kind=k)
assert_raises(ValueError, d.partition, 2, axis=0)
assert_raises(ValueError, d.partition, 11, axis=1)
assert_raises(TypeError, d.partition, 2, axis=None)
assert_raises(ValueError, np.partition, d, 9, axis=1)
assert_raises(ValueError, np.partition, d, 11, axis=None)
assert_raises(ValueError, d.argpartition, 2, axis=0)
assert_raises(ValueError, d.argpartition, 11, axis=1)
assert_raises(ValueError, np.argpartition, d, 9, axis=1)
assert_raises(ValueError, np.argpartition, d, 11, axis=None)
td = [(dt, s) for dt in [np.int32, np.float32, np.complex64]
for s in (9, 16)]
for dt, s in td:
aae = assert_array_equal
at = assert_
d = np.arange(s, dtype=dt)
np.random.shuffle(d)
d1 = np.tile(np.arange(s, dtype=dt), (4, 1))
map(np.random.shuffle, d1)
d0 = np.transpose(d1)
for i in range(d.size):
p = np.partition(d, i, kind=k)
assert_equal(p[i], i)
# all before are smaller
assert_array_less(p[:i], p[i])
# all after are larger
assert_array_less(p[i], p[i + 1:])
aae(p, d[np.argpartition(d, i, kind=k)])
p = np.partition(d1, i, axis=1, kind=k)
aae(p[:, i], np.array([i] * d1.shape[0], dtype=dt))
# array_less does not seem to work right
at((p[:, :i].T <= p[:, i]).all(),
msg="%d: %r <= %r" % (i, p[:, i], p[:, :i].T))
at((p[:, i + 1:].T > p[:, i]).all(),
msg="%d: %r < %r" % (i, p[:, i], p[:, i + 1:].T))
aae(p, d1[np.arange(d1.shape[0])[:, None],
np.argpartition(d1, i, axis=1, kind=k)])
p = np.partition(d0, i, axis=0, kind=k)
aae(p[i, :], np.array([i] * d1.shape[0], dtype=dt))
# array_less does not seem to work right
at((p[:i, :] <= p[i, :]).all(),
msg="%d: %r <= %r" % (i, p[i, :], p[:i, :]))
at((p[i + 1:, :] > p[i, :]).all(),
msg="%d: %r < %r" % (i, p[i, :], p[:, i + 1:]))
aae(p, d0[np.argpartition(d0, i, axis=0, kind=k),
np.arange(d0.shape[1])[None, :]])
# check inplace
dc = d.copy()
dc.partition(i, kind=k)
assert_equal(dc, np.partition(d, i, kind=k))
dc = d0.copy()
dc.partition(i, axis=0, kind=k)
assert_equal(dc, np.partition(d0, i, axis=0, kind=k))
dc = d1.copy()
dc.partition(i, axis=1, kind=k)
assert_equal(dc, np.partition(d1, i, axis=1, kind=k))
def assert_partitioned(self, d, kth):
prev = 0
for k in np.sort(kth):
assert_array_less(d[prev:k], d[k], err_msg='kth %d' % k)
assert_((d[k:] >= d[k]).all(),
msg="kth %d, %r not greater equal %d" % (k, d[k:], d[k]))
prev = k + 1
def test_partition_iterative(self):
d = np.arange(17)
kth = (0, 1, 2, 429, 231)
assert_raises(ValueError, d.partition, kth)
assert_raises(ValueError, d.argpartition, kth)
d = np.arange(10).reshape((2, 5))
assert_raises(ValueError, d.partition, kth, axis=0)
assert_raises(ValueError, d.partition, kth, axis=1)
assert_raises(ValueError, np.partition, d, kth, axis=1)
assert_raises(ValueError, np.partition, d, kth, axis=None)
d = np.array([3, 4, 2, 1])
p = np.partition(d, (0, 3))
self.assert_partitioned(p, (0, 3))
self.assert_partitioned(d[np.argpartition(d, (0, 3))], (0, 3))
assert_array_equal(p, np.partition(d, (-3, -1)))
assert_array_equal(p, d[np.argpartition(d, (-3, -1))])
d = np.arange(17)
np.random.shuffle(d)
d.partition(range(d.size))
assert_array_equal(np.arange(17), d)
np.random.shuffle(d)
assert_array_equal(np.arange(17), d[d.argpartition(range(d.size))])
# test unsorted kth
d = np.arange(17)
np.random.shuffle(d)
keys = np.array([1, 3, 8, -2])
np.random.shuffle(d)
p = np.partition(d, keys)
self.assert_partitioned(p, keys)
p = d[np.argpartition(d, keys)]
self.assert_partitioned(p, keys)
np.random.shuffle(keys)
assert_array_equal(np.partition(d, keys), p)
assert_array_equal(d[np.argpartition(d, keys)], p)
# equal kth
d = np.arange(20)[::-1]
self.assert_partitioned(np.partition(d, [5]*4), [5])
self.assert_partitioned(np.partition(d, [5]*4 + [6, 13]),
[5]*4 + [6, 13])
self.assert_partitioned(d[np.argpartition(d, [5]*4)], [5])
self.assert_partitioned(d[np.argpartition(d, [5]*4 + [6, 13])],
[5]*4 + [6, 13])
d = np.arange(12)
np.random.shuffle(d)
d1 = np.tile(np.arange(12), (4, 1))
map(np.random.shuffle, d1)
d0 = np.transpose(d1)
kth = (1, 6, 7, -1)
p = np.partition(d1, kth, axis=1)
pa = d1[np.arange(d1.shape[0])[:, None],
d1.argpartition(kth, axis=1)]
assert_array_equal(p, pa)
for i in range(d1.shape[0]):
self.assert_partitioned(p[i,:], kth)
p = np.partition(d0, kth, axis=0)
pa = d0[np.argpartition(d0, kth, axis=0),
np.arange(d0.shape[1])[None,:]]
assert_array_equal(p, pa)
for i in range(d0.shape[1]):
self.assert_partitioned(p[:, i], kth)
def test_partition_cdtype(self):
d = np.array([('Galahad', 1.7, 38), ('Arthur', 1.8, 41),
('Lancelot', 1.9, 38)],
dtype=[('name', '|S10'), ('height', '<f8'), ('age', '<i4')])
tgt = np.sort(d, order=['age', 'height'])
assert_array_equal(np.partition(d, range(d.size),
order=['age', 'height']),
tgt)
assert_array_equal(d[np.argpartition(d, range(d.size),
order=['age', 'height'])],
tgt)
for k in range(d.size):
assert_equal(np.partition(d, k, order=['age', 'height'])[k],
tgt[k])
assert_equal(d[np.argpartition(d, k, order=['age', 'height'])][k],
tgt[k])
d = np.array(['Galahad', 'Arthur', 'zebra', 'Lancelot'])
tgt = np.sort(d)
assert_array_equal(np.partition(d, range(d.size)), tgt)
for k in range(d.size):
assert_equal(np.partition(d, k)[k], tgt[k])
assert_equal(d[np.argpartition(d, k)][k], tgt[k])
def test_partition_unicode_kind(self):
d = np.arange(10)
k = b'\xc3\xa4'.decode("UTF8")
assert_raises(ValueError, d.partition, 2, kind=k)
assert_raises(ValueError, d.argpartition, 2, kind=k)
def test_partition_fuzz(self):
# a few rounds of random data testing
for j in range(10, 30):
for i in range(1, j - 2):
d = np.arange(j)
np.random.shuffle(d)
d = d % np.random.randint(2, 30)
idx = np.random.randint(d.size)
kth = [0, idx, i, i + 1]
tgt = np.sort(d)[kth]
assert_array_equal(np.partition(d, kth)[kth], tgt,
err_msg="data: %r\n kth: %r" % (d, kth))
def test_argpartition_gh5524(self):
# A test for functionality of argpartition on lists.
d = [6,7,3,2,9,0]
p = np.argpartition(d,1)
self.assert_partitioned(np.array(d)[p],[1])
def test_flatten(self):
x0 = np.array([[1, 2, 3], [4, 5, 6]], np.int32)
x1 = np.array([[[1, 2], [3, 4]], [[5, 6], [7, 8]]], np.int32)
y0 = np.array([1, 2, 3, 4, 5, 6], np.int32)
y0f = np.array([1, 4, 2, 5, 3, 6], np.int32)
y1 = np.array([1, 2, 3, 4, 5, 6, 7, 8], np.int32)
y1f = np.array([1, 5, 3, 7, 2, 6, 4, 8], np.int32)
assert_equal(x0.flatten(), y0)
assert_equal(x0.flatten('F'), y0f)
assert_equal(x0.flatten('F'), x0.T.flatten())
assert_equal(x1.flatten(), y1)
assert_equal(x1.flatten('F'), y1f)
assert_equal(x1.flatten('F'), x1.T.flatten())
@pytest.mark.parametrize('func', (np.dot, np.matmul))
def test_arr_mult(self, func):
a = np.array([[1, 0], [0, 1]])
b = np.array([[0, 1], [1, 0]])
c = np.array([[9, 1], [1, -9]])
d = np.arange(24).reshape(4, 6)
ddt = np.array(
[[ 55, 145, 235, 325],
[ 145, 451, 757, 1063],
[ 235, 757, 1279, 1801],
[ 325, 1063, 1801, 2539]]
)
dtd = np.array(
[[504, 540, 576, 612, 648, 684],
[540, 580, 620, 660, 700, 740],
[576, 620, 664, 708, 752, 796],
[612, 660, 708, 756, 804, 852],
[648, 700, 752, 804, 856, 908],
[684, 740, 796, 852, 908, 964]]
)
# gemm vs syrk optimizations
for et in [np.float32, np.float64, np.complex64, np.complex128]:
eaf = a.astype(et)
assert_equal(func(eaf, eaf), eaf)
assert_equal(func(eaf.T, eaf), eaf)
assert_equal(func(eaf, eaf.T), eaf)
assert_equal(func(eaf.T, eaf.T), eaf)
assert_equal(func(eaf.T.copy(), eaf), eaf)
assert_equal(func(eaf, eaf.T.copy()), eaf)
assert_equal(func(eaf.T.copy(), eaf.T.copy()), eaf)
# syrk validations
for et in [np.float32, np.float64, np.complex64, np.complex128]:
eaf = a.astype(et)
ebf = b.astype(et)
assert_equal(func(ebf, ebf), eaf)
assert_equal(func(ebf.T, ebf), eaf)
assert_equal(func(ebf, ebf.T), eaf)
assert_equal(func(ebf.T, ebf.T), eaf)
# syrk - different shape, stride, and view validations
for et in [np.float32, np.float64, np.complex64, np.complex128]:
edf = d.astype(et)
assert_equal(
func(edf[::-1, :], edf.T),
func(edf[::-1, :].copy(), edf.T.copy())
)
assert_equal(
func(edf[:, ::-1], edf.T),
func(edf[:, ::-1].copy(), edf.T.copy())
)
assert_equal(
func(edf, edf[::-1, :].T),
func(edf, edf[::-1, :].T.copy())
)
assert_equal(
func(edf, edf[:, ::-1].T),
func(edf, edf[:, ::-1].T.copy())
)
assert_equal(
func(edf[:edf.shape[0] // 2, :], edf[::2, :].T),
func(edf[:edf.shape[0] // 2, :].copy(), edf[::2, :].T.copy())
)
assert_equal(
func(edf[::2, :], edf[:edf.shape[0] // 2, :].T),
func(edf[::2, :].copy(), edf[:edf.shape[0] // 2, :].T.copy())
)
# syrk - different shape
for et in [np.float32, np.float64, np.complex64, np.complex128]:
edf = d.astype(et)
eddtf = ddt.astype(et)
edtdf = dtd.astype(et)
assert_equal(func(edf, edf.T), eddtf)
assert_equal(func(edf.T, edf), edtdf)
@pytest.mark.parametrize('func', (np.dot, np.matmul))
@pytest.mark.parametrize('dtype', 'ifdFD')
def test_no_dgemv(self, func, dtype):
# check vector arg for contiguous before gemv
# gh-12156
a = np.arange(8.0, dtype=dtype).reshape(2, 4)
b = np.broadcast_to(1., (4, 1))
ret1 = func(a, b)
ret2 = func(a, b.copy())
assert_equal(ret1, ret2)
ret1 = func(b.T, a.T)
ret2 = func(b.T.copy(), a.T)
assert_equal(ret1, ret2)
# check for unaligned data
dt = np.dtype(dtype)
a = np.zeros(8 * dt.itemsize // 2 + 1, dtype='int16')[1:].view(dtype)
a = a.reshape(2, 4)
b = a[0]
# make sure it is not aligned
assert_(a.__array_interface__['data'][0] % dt.itemsize != 0)
ret1 = func(a, b)
ret2 = func(a.copy(), b.copy())
assert_equal(ret1, ret2)
ret1 = func(b.T, a.T)
ret2 = func(b.T.copy(), a.T.copy())
assert_equal(ret1, ret2)
def test_dot(self):
a = np.array([[1, 0], [0, 1]])
b = np.array([[0, 1], [1, 0]])
c = np.array([[9, 1], [1, -9]])
# function versus methods
assert_equal(np.dot(a, b), a.dot(b))
assert_equal(np.dot(np.dot(a, b), c), a.dot(b).dot(c))
# test passing in an output array
c = np.zeros_like(a)
a.dot(b, c)
assert_equal(c, np.dot(a, b))
# test keyword args
c = np.zeros_like(a)
a.dot(b=b, out=c)
assert_equal(c, np.dot(a, b))
def test_dot_type_mismatch(self):
c = 1.
A = np.array((1,1), dtype='i,i')
assert_raises(TypeError, np.dot, c, A)
assert_raises(TypeError, np.dot, A, c)
def test_dot_out_mem_overlap(self):
np.random.seed(1)
# Test BLAS and non-BLAS code paths, including all dtypes
# that dot() supports
dtypes = [np.dtype(code) for code in np.typecodes['All']
if code not in 'USVM']
for dtype in dtypes:
a = np.random.rand(3, 3).astype(dtype)
# Valid dot() output arrays must be aligned
b = _aligned_zeros((3, 3), dtype=dtype)
b[...] = np.random.rand(3, 3)
y = np.dot(a, b)
x = np.dot(a, b, out=b)
assert_equal(x, y, err_msg=repr(dtype))
# Check invalid output array
assert_raises(ValueError, np.dot, a, b, out=b[::2])
assert_raises(ValueError, np.dot, a, b, out=b.T)
def test_dot_matmul_out(self):
# gh-9641
class Sub(np.ndarray):
pass
a = np.ones((2, 2)).view(Sub)
b = np.ones((2, 2)).view(Sub)
out = np.ones((2, 2))
# make sure out can be any ndarray (not only subclass of inputs)
np.dot(a, b, out=out)
np.matmul(a, b, out=out)
def test_dot_matmul_inner_array_casting_fails(self):
class A:
def __array__(self, *args, **kwargs):
raise NotImplementedError
# Don't override the error from calling __array__()
assert_raises(NotImplementedError, np.dot, A(), A())
assert_raises(NotImplementedError, np.matmul, A(), A())
assert_raises(NotImplementedError, np.inner, A(), A())
def test_matmul_out(self):
# overlapping memory
a = np.arange(18).reshape(2, 3, 3)
b = np.matmul(a, a)
c = np.matmul(a, a, out=a)
assert_(c is a)
assert_equal(c, b)
a = np.arange(18).reshape(2, 3, 3)
c = np.matmul(a, a, out=a[::-1, ...])
assert_(c.base is a.base)
assert_equal(c, b)
def test_diagonal(self):
a = np.arange(12).reshape((3, 4))
assert_equal(a.diagonal(), [0, 5, 10])
assert_equal(a.diagonal(0), [0, 5, 10])
assert_equal(a.diagonal(1), [1, 6, 11])
assert_equal(a.diagonal(-1), [4, 9])
assert_raises(np.AxisError, a.diagonal, axis1=0, axis2=5)
assert_raises(np.AxisError, a.diagonal, axis1=5, axis2=0)
assert_raises(np.AxisError, a.diagonal, axis1=5, axis2=5)
assert_raises(ValueError, a.diagonal, axis1=1, axis2=1)
b = np.arange(8).reshape((2, 2, 2))
assert_equal(b.diagonal(), [[0, 6], [1, 7]])
assert_equal(b.diagonal(0), [[0, 6], [1, 7]])
assert_equal(b.diagonal(1), [[2], [3]])
assert_equal(b.diagonal(-1), [[4], [5]])
assert_raises(ValueError, b.diagonal, axis1=0, axis2=0)
assert_equal(b.diagonal(0, 1, 2), [[0, 3], [4, 7]])
assert_equal(b.diagonal(0, 0, 1), [[0, 6], [1, 7]])
assert_equal(b.diagonal(offset=1, axis1=0, axis2=2), [[1], [3]])
# Order of axis argument doesn't matter:
assert_equal(b.diagonal(0, 2, 1), [[0, 3], [4, 7]])
def test_diagonal_view_notwriteable(self):
a = np.eye(3).diagonal()
assert_(not a.flags.writeable)
assert_(not a.flags.owndata)
a = np.diagonal(np.eye(3))
assert_(not a.flags.writeable)
assert_(not a.flags.owndata)
a = np.diag(np.eye(3))
assert_(not a.flags.writeable)
assert_(not a.flags.owndata)
def test_diagonal_memleak(self):
# Regression test for a bug that crept in at one point
a = np.zeros((100, 100))
if HAS_REFCOUNT:
assert_(sys.getrefcount(a) < 50)
for i in range(100):
a.diagonal()
if HAS_REFCOUNT:
assert_(sys.getrefcount(a) < 50)
def test_size_zero_memleak(self):
# Regression test for issue 9615
# Exercises a special-case code path for dot products of length
# zero in cblasfuncs (making it is specific to floating dtypes).
a = np.array([], dtype=np.float64)
x = np.array(2.0)
for _ in range(100):
np.dot(a, a, out=x)
if HAS_REFCOUNT:
assert_(sys.getrefcount(x) < 50)
def test_trace(self):
a = np.arange(12).reshape((3, 4))
assert_equal(a.trace(), 15)
assert_equal(a.trace(0), 15)
assert_equal(a.trace(1), 18)
assert_equal(a.trace(-1), 13)
b = np.arange(8).reshape((2, 2, 2))
assert_equal(b.trace(), [6, 8])
assert_equal(b.trace(0), [6, 8])
assert_equal(b.trace(1), [2, 3])
assert_equal(b.trace(-1), [4, 5])
assert_equal(b.trace(0, 0, 1), [6, 8])
assert_equal(b.trace(0, 0, 2), [5, 9])
assert_equal(b.trace(0, 1, 2), [3, 11])
assert_equal(b.trace(offset=1, axis1=0, axis2=2), [1, 3])
def test_trace_subclass(self):
# The class would need to overwrite trace to ensure single-element
# output also has the right subclass.
class MyArray(np.ndarray):
pass
b = np.arange(8).reshape((2, 2, 2)).view(MyArray)
t = b.trace()
assert_(isinstance(t, MyArray))
def test_put(self):
icodes = np.typecodes['AllInteger']
fcodes = np.typecodes['AllFloat']
for dt in icodes + fcodes + 'O':
tgt = np.array([0, 1, 0, 3, 0, 5], dtype=dt)
# test 1-d
a = np.zeros(6, dtype=dt)
a.put([1, 3, 5], [1, 3, 5])
assert_equal(a, tgt)
# test 2-d
a = np.zeros((2, 3), dtype=dt)
a.put([1, 3, 5], [1, 3, 5])
assert_equal(a, tgt.reshape(2, 3))
for dt in '?':
tgt = np.array([False, True, False, True, False, True], dtype=dt)
# test 1-d
a = np.zeros(6, dtype=dt)
a.put([1, 3, 5], [True]*3)
assert_equal(a, tgt)
# test 2-d
a = np.zeros((2, 3), dtype=dt)
a.put([1, 3, 5], [True]*3)
assert_equal(a, tgt.reshape(2, 3))
# check must be writeable
a = np.zeros(6)
a.flags.writeable = False
assert_raises(ValueError, a.put, [1, 3, 5], [1, 3, 5])
# when calling np.put, make sure a
# TypeError is raised if the object
# isn't an ndarray
bad_array = [1, 2, 3]
assert_raises(TypeError, np.put, bad_array, [0, 2], 5)
def test_ravel(self):
a = np.array([[0, 1], [2, 3]])
assert_equal(a.ravel(), [0, 1, 2, 3])
assert_(not a.ravel().flags.owndata)
assert_equal(a.ravel('F'), [0, 2, 1, 3])
assert_equal(a.ravel(order='C'), [0, 1, 2, 3])
assert_equal(a.ravel(order='F'), [0, 2, 1, 3])
assert_equal(a.ravel(order='A'), [0, 1, 2, 3])
assert_(not a.ravel(order='A').flags.owndata)
assert_equal(a.ravel(order='K'), [0, 1, 2, 3])
assert_(not a.ravel(order='K').flags.owndata)
assert_equal(a.ravel(), a.reshape(-1))
a = np.array([[0, 1], [2, 3]], order='F')
assert_equal(a.ravel(), [0, 1, 2, 3])
assert_equal(a.ravel(order='A'), [0, 2, 1, 3])
assert_equal(a.ravel(order='K'), [0, 2, 1, 3])
assert_(not a.ravel(order='A').flags.owndata)
assert_(not a.ravel(order='K').flags.owndata)
assert_equal(a.ravel(), a.reshape(-1))
assert_equal(a.ravel(order='A'), a.reshape(-1, order='A'))
a = np.array([[0, 1], [2, 3]])[::-1, :]
assert_equal(a.ravel(), [2, 3, 0, 1])
assert_equal(a.ravel(order='C'), [2, 3, 0, 1])
assert_equal(a.ravel(order='F'), [2, 0, 3, 1])
assert_equal(a.ravel(order='A'), [2, 3, 0, 1])
# 'K' doesn't reverse the axes of negative strides
assert_equal(a.ravel(order='K'), [2, 3, 0, 1])
assert_(a.ravel(order='K').flags.owndata)
# Test simple 1-d copy behaviour:
a = np.arange(10)[::2]
assert_(a.ravel('K').flags.owndata)
assert_(a.ravel('C').flags.owndata)
assert_(a.ravel('F').flags.owndata)
# Not contiguous and 1-sized axis with non matching stride
a = np.arange(2**3 * 2)[::2]
a = a.reshape(2, 1, 2, 2).swapaxes(-1, -2)
strides = list(a.strides)
strides[1] = 123
a.strides = strides
assert_(a.ravel(order='K').flags.owndata)
assert_equal(a.ravel('K'), np.arange(0, 15, 2))
# contiguous and 1-sized axis with non matching stride works:
a = np.arange(2**3)
a = a.reshape(2, 1, 2, 2).swapaxes(-1, -2)
strides = list(a.strides)
strides[1] = 123
a.strides = strides
assert_(np.may_share_memory(a.ravel(order='K'), a))
assert_equal(a.ravel(order='K'), np.arange(2**3))
# Test negative strides (not very interesting since non-contiguous):
a = np.arange(4)[::-1].reshape(2, 2)
assert_(a.ravel(order='C').flags.owndata)
assert_(a.ravel(order='K').flags.owndata)
assert_equal(a.ravel('C'), [3, 2, 1, 0])
assert_equal(a.ravel('K'), [3, 2, 1, 0])
# 1-element tidy strides test (NPY_RELAXED_STRIDES_CHECKING):
a = np.array([[1]])
a.strides = (123, 432)
# If the stride is not 8, NPY_RELAXED_STRIDES_CHECKING is messing
# them up on purpose:
if np.ones(1).strides == (8,):
assert_(np.may_share_memory(a.ravel('K'), a))
assert_equal(a.ravel('K').strides, (a.dtype.itemsize,))
for order in ('C', 'F', 'A', 'K'):
# 0-d corner case:
a = np.array(0)
assert_equal(a.ravel(order), [0])
assert_(np.may_share_memory(a.ravel(order), a))
# Test that certain non-inplace ravels work right (mostly) for 'K':
b = np.arange(2**4 * 2)[::2].reshape(2, 2, 2, 2)
a = b[..., ::2]
assert_equal(a.ravel('K'), [0, 4, 8, 12, 16, 20, 24, 28])
assert_equal(a.ravel('C'), [0, 4, 8, 12, 16, 20, 24, 28])
assert_equal(a.ravel('A'), [0, 4, 8, 12, 16, 20, 24, 28])
assert_equal(a.ravel('F'), [0, 16, 8, 24, 4, 20, 12, 28])
a = b[::2, ...]
assert_equal(a.ravel('K'), [0, 2, 4, 6, 8, 10, 12, 14])
assert_equal(a.ravel('C'), [0, 2, 4, 6, 8, 10, 12, 14])
assert_equal(a.ravel('A'), [0, 2, 4, 6, 8, 10, 12, 14])
assert_equal(a.ravel('F'), [0, 8, 4, 12, 2, 10, 6, 14])
def test_ravel_subclass(self):
class ArraySubclass(np.ndarray):
pass
a = np.arange(10).view(ArraySubclass)
assert_(isinstance(a.ravel('C'), ArraySubclass))
assert_(isinstance(a.ravel('F'), ArraySubclass))
assert_(isinstance(a.ravel('A'), ArraySubclass))
assert_(isinstance(a.ravel('K'), ArraySubclass))
a = np.arange(10)[::2].view(ArraySubclass)
assert_(isinstance(a.ravel('C'), ArraySubclass))
assert_(isinstance(a.ravel('F'), ArraySubclass))
assert_(isinstance(a.ravel('A'), ArraySubclass))
assert_(isinstance(a.ravel('K'), ArraySubclass))
def test_swapaxes(self):
a = np.arange(1*2*3*4).reshape(1, 2, 3, 4).copy()
idx = np.indices(a.shape)
assert_(a.flags['OWNDATA'])
b = a.copy()
# check exceptions
assert_raises(np.AxisError, a.swapaxes, -5, 0)
assert_raises(np.AxisError, a.swapaxes, 4, 0)
assert_raises(np.AxisError, a.swapaxes, 0, -5)
assert_raises(np.AxisError, a.swapaxes, 0, 4)
for i in range(-4, 4):
for j in range(-4, 4):
for k, src in enumerate((a, b)):
c = src.swapaxes(i, j)
# check shape
shape = list(src.shape)
shape[i] = src.shape[j]
shape[j] = src.shape[i]
assert_equal(c.shape, shape, str((i, j, k)))
# check array contents
i0, i1, i2, i3 = [dim-1 for dim in c.shape]
j0, j1, j2, j3 = [dim-1 for dim in src.shape]
assert_equal(src[idx[j0], idx[j1], idx[j2], idx[j3]],
c[idx[i0], idx[i1], idx[i2], idx[i3]],
str((i, j, k)))
# check a view is always returned, gh-5260
assert_(not c.flags['OWNDATA'], str((i, j, k)))
# check on non-contiguous input array
if k == 1:
b = c
def test_conjugate(self):
a = np.array([1-1j, 1+1j, 23+23.0j])
ac = a.conj()
assert_equal(a.real, ac.real)
assert_equal(a.imag, -ac.imag)
assert_equal(ac, a.conjugate())
assert_equal(ac, np.conjugate(a))
a = np.array([1-1j, 1+1j, 23+23.0j], 'F')
ac = a.conj()
assert_equal(a.real, ac.real)
assert_equal(a.imag, -ac.imag)
assert_equal(ac, a.conjugate())
assert_equal(ac, np.conjugate(a))
a = np.array([1, 2, 3])
ac = a.conj()
assert_equal(a, ac)
assert_equal(ac, a.conjugate())
assert_equal(ac, np.conjugate(a))
a = np.array([1.0, 2.0, 3.0])
ac = a.conj()
assert_equal(a, ac)
assert_equal(ac, a.conjugate())
assert_equal(ac, np.conjugate(a))
a = np.array([1-1j, 1+1j, 1, 2.0], object)
ac = a.conj()
assert_equal(ac, [k.conjugate() for k in a])
assert_equal(ac, a.conjugate())
assert_equal(ac, np.conjugate(a))
a = np.array([1-1j, 1, 2.0, 'f'], object)
assert_raises(TypeError, lambda: a.conj())
assert_raises(TypeError, lambda: a.conjugate())
def test__complex__(self):
dtypes = ['i1', 'i2', 'i4', 'i8',
'u1', 'u2', 'u4', 'u8',
'f', 'd', 'g', 'F', 'D', 'G',
'?', 'O']
for dt in dtypes:
a = np.array(7, dtype=dt)
b = np.array([7], dtype=dt)
c = np.array([[[[[7]]]]], dtype=dt)
msg = 'dtype: {0}'.format(dt)
ap = complex(a)
assert_equal(ap, a, msg)
bp = complex(b)
assert_equal(bp, b, msg)
cp = complex(c)
assert_equal(cp, c, msg)
def test__complex__should_not_work(self):
dtypes = ['i1', 'i2', 'i4', 'i8',
'u1', 'u2', 'u4', 'u8',
'f', 'd', 'g', 'F', 'D', 'G',
'?', 'O']
for dt in dtypes:
a = np.array([1, 2, 3], dtype=dt)
assert_raises(TypeError, complex, a)
dt = np.dtype([('a', 'f8'), ('b', 'i1')])
b = np.array((1.0, 3), dtype=dt)
assert_raises(TypeError, complex, b)
c = np.array([(1.0, 3), (2e-3, 7)], dtype=dt)
assert_raises(TypeError, complex, c)
d = np.array('1+1j')
assert_raises(TypeError, complex, d)
e = np.array(['1+1j'], 'U')
assert_raises(TypeError, complex, e)
class TestCequenceMethods:
def test_array_contains(self):
assert_(4.0 in np.arange(16.).reshape(4,4))
assert_(20.0 not in np.arange(16.).reshape(4,4))
class TestBinop:
def test_inplace(self):
# test refcount 1 inplace conversion
assert_array_almost_equal(np.array([0.5]) * np.array([1.0, 2.0]),
[0.5, 1.0])
d = np.array([0.5, 0.5])[::2]
assert_array_almost_equal(d * (d * np.array([1.0, 2.0])),
[0.25, 0.5])
a = np.array([0.5])
b = np.array([0.5])
c = a + b
c = a - b
c = a * b
c = a / b
assert_equal(a, b)
assert_almost_equal(c, 1.)
c = a + b * 2. / b * a - a / b
assert_equal(a, b)
assert_equal(c, 0.5)
# true divide
a = np.array([5])
b = np.array([3])
c = (a * a) / b
assert_almost_equal(c, 25 / 3)
assert_equal(a, 5)
assert_equal(b, 3)
# ndarray.__rop__ always calls ufunc
# ndarray.__iop__ always calls ufunc
# ndarray.__op__, __rop__:
# - defer if other has __array_ufunc__ and it is None
# or other is not a subclass and has higher array priority
# - else, call ufunc
def test_ufunc_binop_interaction(self):
# Python method name (without underscores)
# -> (numpy ufunc, has_in_place_version, preferred_dtype)
ops = {
'add': (np.add, True, float),
'sub': (np.subtract, True, float),
'mul': (np.multiply, True, float),
'truediv': (np.true_divide, True, float),
'floordiv': (np.floor_divide, True, float),
'mod': (np.remainder, True, float),
'divmod': (np.divmod, False, float),
'pow': (np.power, True, int),
'lshift': (np.left_shift, True, int),
'rshift': (np.right_shift, True, int),
'and': (np.bitwise_and, True, int),
'xor': (np.bitwise_xor, True, int),
'or': (np.bitwise_or, True, int),
'matmul': (np.matmul, False, float),
# 'ge': (np.less_equal, False),
# 'gt': (np.less, False),
# 'le': (np.greater_equal, False),
# 'lt': (np.greater, False),
# 'eq': (np.equal, False),
# 'ne': (np.not_equal, False),
}
class Coerced(Exception):
pass
def array_impl(self):
raise Coerced
def op_impl(self, other):
return "forward"
def rop_impl(self, other):
return "reverse"
def iop_impl(self, other):
return "in-place"
def array_ufunc_impl(self, ufunc, method, *args, **kwargs):
return ("__array_ufunc__", ufunc, method, args, kwargs)
# Create an object with the given base, in the given module, with a
# bunch of placeholder __op__ methods, and optionally a
# __array_ufunc__ and __array_priority__.
def make_obj(base, array_priority=False, array_ufunc=False,
alleged_module="__main__"):
class_namespace = {"__array__": array_impl}
if array_priority is not False:
class_namespace["__array_priority__"] = array_priority
for op in ops:
class_namespace["__{0}__".format(op)] = op_impl
class_namespace["__r{0}__".format(op)] = rop_impl
class_namespace["__i{0}__".format(op)] = iop_impl
if array_ufunc is not False:
class_namespace["__array_ufunc__"] = array_ufunc
eval_namespace = {"base": base,
"class_namespace": class_namespace,
"__name__": alleged_module,
}
MyType = eval("type('MyType', (base,), class_namespace)",
eval_namespace)
if issubclass(MyType, np.ndarray):
# Use this range to avoid special case weirdnesses around
# divide-by-0, pow(x, 2), overflow due to pow(big, big), etc.
return np.arange(3, 7).reshape(2, 2).view(MyType)
else:
return MyType()
def check(obj, binop_override_expected, ufunc_override_expected,
inplace_override_expected, check_scalar=True):
for op, (ufunc, has_inplace, dtype) in ops.items():
err_msg = ('op: %s, ufunc: %s, has_inplace: %s, dtype: %s'
% (op, ufunc, has_inplace, dtype))
check_objs = [np.arange(3, 7, dtype=dtype).reshape(2, 2)]
if check_scalar:
check_objs.append(check_objs[0][0])
for arr in check_objs:
arr_method = getattr(arr, "__{0}__".format(op))
def first_out_arg(result):
if op == "divmod":
assert_(isinstance(result, tuple))
return result[0]
else:
return result
# arr __op__ obj
if binop_override_expected:
assert_equal(arr_method(obj), NotImplemented, err_msg)
elif ufunc_override_expected:
assert_equal(arr_method(obj)[0], "__array_ufunc__",
err_msg)
else:
if (isinstance(obj, np.ndarray) and
(type(obj).__array_ufunc__ is
np.ndarray.__array_ufunc__)):
# __array__ gets ignored
res = first_out_arg(arr_method(obj))
assert_(res.__class__ is obj.__class__, err_msg)
else:
assert_raises((TypeError, Coerced),
arr_method, obj, err_msg=err_msg)
# obj __op__ arr
arr_rmethod = getattr(arr, "__r{0}__".format(op))
if ufunc_override_expected:
res = arr_rmethod(obj)
assert_equal(res[0], "__array_ufunc__",
err_msg=err_msg)
assert_equal(res[1], ufunc, err_msg=err_msg)
else:
if (isinstance(obj, np.ndarray) and
(type(obj).__array_ufunc__ is
np.ndarray.__array_ufunc__)):
# __array__ gets ignored
res = first_out_arg(arr_rmethod(obj))
assert_(res.__class__ is obj.__class__, err_msg)
else:
# __array_ufunc__ = "asdf" creates a TypeError
assert_raises((TypeError, Coerced),
arr_rmethod, obj, err_msg=err_msg)
# arr __iop__ obj
# array scalars don't have in-place operators
if has_inplace and isinstance(arr, np.ndarray):
arr_imethod = getattr(arr, "__i{0}__".format(op))
if inplace_override_expected:
assert_equal(arr_method(obj), NotImplemented,
err_msg=err_msg)
elif ufunc_override_expected:
res = arr_imethod(obj)
assert_equal(res[0], "__array_ufunc__", err_msg)
assert_equal(res[1], ufunc, err_msg)
assert_(type(res[-1]["out"]) is tuple, err_msg)
assert_(res[-1]["out"][0] is arr, err_msg)
else:
if (isinstance(obj, np.ndarray) and
(type(obj).__array_ufunc__ is
np.ndarray.__array_ufunc__)):
# __array__ gets ignored
assert_(arr_imethod(obj) is arr, err_msg)
else:
assert_raises((TypeError, Coerced),
arr_imethod, obj,
err_msg=err_msg)
op_fn = getattr(operator, op, None)
if op_fn is None:
op_fn = getattr(operator, op + "_", None)
if op_fn is None:
op_fn = getattr(builtins, op)
assert_equal(op_fn(obj, arr), "forward", err_msg)
if not isinstance(obj, np.ndarray):
if binop_override_expected:
assert_equal(op_fn(arr, obj), "reverse", err_msg)
elif ufunc_override_expected:
assert_equal(op_fn(arr, obj)[0], "__array_ufunc__",
err_msg)
if ufunc_override_expected:
assert_equal(ufunc(obj, arr)[0], "__array_ufunc__",
err_msg)
# No array priority, no array_ufunc -> nothing called
check(make_obj(object), False, False, False)
# Negative array priority, no array_ufunc -> nothing called
# (has to be very negative, because scalar priority is -1000000.0)
check(make_obj(object, array_priority=-2**30), False, False, False)
# Positive array priority, no array_ufunc -> binops and iops only
check(make_obj(object, array_priority=1), True, False, True)
# ndarray ignores array_priority for ndarray subclasses
check(make_obj(np.ndarray, array_priority=1), False, False, False,
check_scalar=False)
# Positive array_priority and array_ufunc -> array_ufunc only
check(make_obj(object, array_priority=1,
array_ufunc=array_ufunc_impl), False, True, False)
check(make_obj(np.ndarray, array_priority=1,
array_ufunc=array_ufunc_impl), False, True, False)
# array_ufunc set to None -> defer binops only
check(make_obj(object, array_ufunc=None), True, False, False)
check(make_obj(np.ndarray, array_ufunc=None), True, False, False,
check_scalar=False)
def test_ufunc_override_normalize_signature(self):
# gh-5674
class SomeClass:
def __array_ufunc__(self, ufunc, method, *inputs, **kw):
return kw
a = SomeClass()
kw = np.add(a, [1])
assert_('sig' not in kw and 'signature' not in kw)
kw = np.add(a, [1], sig='ii->i')
assert_('sig' not in kw and 'signature' in kw)
assert_equal(kw['signature'], 'ii->i')
kw = np.add(a, [1], signature='ii->i')
assert_('sig' not in kw and 'signature' in kw)
assert_equal(kw['signature'], 'ii->i')
def test_array_ufunc_index(self):
# Check that index is set appropriately, also if only an output
# is passed on (latter is another regression tests for github bug 4753)
# This also checks implicitly that 'out' is always a tuple.
class CheckIndex:
def __array_ufunc__(self, ufunc, method, *inputs, **kw):
for i, a in enumerate(inputs):
if a is self:
return i
# calls below mean we must be in an output.
for j, a in enumerate(kw['out']):
if a is self:
return (j,)
a = CheckIndex()
dummy = np.arange(2.)
# 1 input, 1 output
assert_equal(np.sin(a), 0)
assert_equal(np.sin(dummy, a), (0,))
assert_equal(np.sin(dummy, out=a), (0,))
assert_equal(np.sin(dummy, out=(a,)), (0,))
assert_equal(np.sin(a, a), 0)
assert_equal(np.sin(a, out=a), 0)
assert_equal(np.sin(a, out=(a,)), 0)
# 1 input, 2 outputs
assert_equal(np.modf(dummy, a), (0,))
assert_equal(np.modf(dummy, None, a), (1,))
assert_equal(np.modf(dummy, dummy, a), (1,))
assert_equal(np.modf(dummy, out=(a, None)), (0,))
assert_equal(np.modf(dummy, out=(a, dummy)), (0,))
assert_equal(np.modf(dummy, out=(None, a)), (1,))
assert_equal(np.modf(dummy, out=(dummy, a)), (1,))
assert_equal(np.modf(a, out=(dummy, a)), 0)
with assert_raises(TypeError):
# Out argument must be tuple, since there are multiple outputs
np.modf(dummy, out=a)
assert_raises(ValueError, np.modf, dummy, out=(a,))
# 2 inputs, 1 output
assert_equal(np.add(a, dummy), 0)
assert_equal(np.add(dummy, a), 1)
assert_equal(np.add(dummy, dummy, a), (0,))
assert_equal(np.add(dummy, a, a), 1)
assert_equal(np.add(dummy, dummy, out=a), (0,))
assert_equal(np.add(dummy, dummy, out=(a,)), (0,))
assert_equal(np.add(a, dummy, out=a), 0)
def test_out_override(self):
# regression test for github bug 4753
class OutClass(np.ndarray):
def __array_ufunc__(self, ufunc, method, *inputs, **kw):
if 'out' in kw:
tmp_kw = kw.copy()
tmp_kw.pop('out')
func = getattr(ufunc, method)
kw['out'][0][...] = func(*inputs, **tmp_kw)
A = np.array([0]).view(OutClass)
B = np.array([5])
C = np.array([6])
np.multiply(C, B, A)
assert_equal(A[0], 30)
assert_(isinstance(A, OutClass))
A[0] = 0
np.multiply(C, B, out=A)
assert_equal(A[0], 30)
assert_(isinstance(A, OutClass))
def test_pow_override_with_errors(self):
# regression test for gh-9112
class PowerOnly(np.ndarray):
def __array_ufunc__(self, ufunc, method, *inputs, **kw):
if ufunc is not np.power:
raise NotImplementedError
return "POWER!"
# explicit cast to float, to ensure the fast power path is taken.
a = np.array(5., dtype=np.float64).view(PowerOnly)
assert_equal(a ** 2.5, "POWER!")
with assert_raises(NotImplementedError):
a ** 0.5
with assert_raises(NotImplementedError):
a ** 0
with assert_raises(NotImplementedError):
a ** 1
with assert_raises(NotImplementedError):
a ** -1
with assert_raises(NotImplementedError):
a ** 2
def test_pow_array_object_dtype(self):
# test pow on arrays of object dtype
class SomeClass:
def __init__(self, num=None):
self.num = num
# want to ensure a fast pow path is not taken
def __mul__(self, other):
raise AssertionError('__mul__ should not be called')
def __div__(self, other):
raise AssertionError('__div__ should not be called')
def __pow__(self, exp):
return SomeClass(num=self.num ** exp)
def __eq__(self, other):
if isinstance(other, SomeClass):
return self.num == other.num
__rpow__ = __pow__
def pow_for(exp, arr):
return np.array([x ** exp for x in arr])
obj_arr = np.array([SomeClass(1), SomeClass(2), SomeClass(3)])
assert_equal(obj_arr ** 0.5, pow_for(0.5, obj_arr))
assert_equal(obj_arr ** 0, pow_for(0, obj_arr))
assert_equal(obj_arr ** 1, pow_for(1, obj_arr))
assert_equal(obj_arr ** -1, pow_for(-1, obj_arr))
assert_equal(obj_arr ** 2, pow_for(2, obj_arr))
def test_pos_array_ufunc_override(self):
class A(np.ndarray):
def __array_ufunc__(self, ufunc, method, *inputs, **kwargs):
return getattr(ufunc, method)(*[i.view(np.ndarray) for
i in inputs], **kwargs)
tst = np.array('foo').view(A)
with assert_raises(TypeError):
+tst
class TestTemporaryElide:
# elision is only triggered on relatively large arrays
def test_extension_incref_elide(self):
# test extension (e.g. cython) calling PyNumber_* slots without
# increasing the reference counts
#
# def incref_elide(a):
# d = input.copy() # refcount 1
# return d, d + d # PyNumber_Add without increasing refcount
from numpy.core._multiarray_tests import incref_elide
d = np.ones(100000)
orig, res = incref_elide(d)
d + d
# the return original should not be changed to an inplace operation
assert_array_equal(orig, d)
assert_array_equal(res, d + d)
def test_extension_incref_elide_stack(self):
# scanning if the refcount == 1 object is on the python stack to check
# that we are called directly from python is flawed as object may still
# be above the stack pointer and we have no access to the top of it
#
# def incref_elide_l(d):
# return l[4] + l[4] # PyNumber_Add without increasing refcount
from numpy.core._multiarray_tests import incref_elide_l
# padding with 1 makes sure the object on the stack is not overwritten
l = [1, 1, 1, 1, np.ones(100000)]
res = incref_elide_l(l)
# the return original should not be changed to an inplace operation
assert_array_equal(l[4], np.ones(100000))
assert_array_equal(res, l[4] + l[4])
def test_temporary_with_cast(self):
# check that we don't elide into a temporary which would need casting
d = np.ones(200000, dtype=np.int64)
assert_equal(((d + d) + 2**222).dtype, np.dtype('O'))
r = ((d + d) / 2)
assert_equal(r.dtype, np.dtype('f8'))
r = np.true_divide((d + d), 2)
assert_equal(r.dtype, np.dtype('f8'))
r = ((d + d) / 2.)
assert_equal(r.dtype, np.dtype('f8'))
r = ((d + d) // 2)
assert_equal(r.dtype, np.dtype(np.int64))
# commutative elision into the astype result
f = np.ones(100000, dtype=np.float32)
assert_equal(((f + f) + f.astype(np.float64)).dtype, np.dtype('f8'))
# no elision into lower type
d = f.astype(np.float64)
assert_equal(((f + f) + d).dtype, d.dtype)
l = np.ones(100000, dtype=np.longdouble)
assert_equal(((d + d) + l).dtype, l.dtype)
# test unary abs with different output dtype
for dt in (np.complex64, np.complex128, np.clongdouble):
c = np.ones(100000, dtype=dt)
r = abs(c * 2.0)
assert_equal(r.dtype, np.dtype('f%d' % (c.itemsize // 2)))
def test_elide_broadcast(self):
# test no elision on broadcast to higher dimension
# only triggers elision code path in debug mode as triggering it in
# normal mode needs 256kb large matching dimension, so a lot of memory
d = np.ones((2000, 1), dtype=int)
b = np.ones((2000), dtype=bool)
r = (1 - d) + b
assert_equal(r, 1)
assert_equal(r.shape, (2000, 2000))
def test_elide_scalar(self):
# check inplace op does not create ndarray from scalars
a = np.bool_()
assert_(type(~(a & a)) is np.bool_)
def test_elide_scalar_readonly(self):
# The imaginary part of a real array is readonly. This needs to go
# through fast_scalar_power which is only called for powers of
# +1, -1, 0, 0.5, and 2, so use 2. Also need valid refcount for
# elision which can be gotten for the imaginary part of a real
# array. Should not error.
a = np.empty(100000, dtype=np.float64)
a.imag ** 2
def test_elide_readonly(self):
# don't try to elide readonly temporaries
r = np.asarray(np.broadcast_to(np.zeros(1), 100000).flat) * 0.0
assert_equal(r, 0)
def test_elide_updateifcopy(self):
a = np.ones(2**20)[::2]
b = a.flat.__array__() + 1
del b
assert_equal(a, 1)
class TestCAPI:
def test_IsPythonScalar(self):
from numpy.core._multiarray_tests import IsPythonScalar
assert_(IsPythonScalar(b'foobar'))
assert_(IsPythonScalar(1))
assert_(IsPythonScalar(2**80))
assert_(IsPythonScalar(2.))
assert_(IsPythonScalar("a"))
class TestSubscripting:
def test_test_zero_rank(self):
x = np.array([1, 2, 3])
assert_(isinstance(x[0], np.int_))
assert_(type(x[0, ...]) is np.ndarray)
class TestPickling:
@pytest.mark.skipif(pickle.HIGHEST_PROTOCOL >= 5,
reason=('this tests the error messages when trying to'
'protocol 5 although it is not available'))
def test_correct_protocol5_error_message(self):
array = np.arange(10)
if sys.version_info[:2] in ((3, 6), (3, 7)):
# For the specific case of python3.6 and 3.7, raise a clear import
# error about the pickle5 backport when trying to use protocol=5
# without the pickle5 package
with pytest.raises(ImportError):
array.__reduce_ex__(5)
elif sys.version_info[:2] < (3, 6):
# when calling __reduce_ex__ explicitly with protocol=5 on python
# raise a ValueError saying that protocol 5 is not available for
# this python version
with pytest.raises(ValueError):
array.__reduce_ex__(5)
def test_record_array_with_object_dtype(self):
my_object = object()
arr_with_object = np.array(
[(my_object, 1, 2.0)],
dtype=[('a', object), ('b', int), ('c', float)])
arr_without_object = np.array(
[('xxx', 1, 2.0)],
dtype=[('a', str), ('b', int), ('c', float)])
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
depickled_arr_with_object = pickle.loads(
pickle.dumps(arr_with_object, protocol=proto))
depickled_arr_without_object = pickle.loads(
pickle.dumps(arr_without_object, protocol=proto))
assert_equal(arr_with_object.dtype,
depickled_arr_with_object.dtype)
assert_equal(arr_without_object.dtype,
depickled_arr_without_object.dtype)
@pytest.mark.skipif(pickle.HIGHEST_PROTOCOL < 5,
reason="requires pickle protocol 5")
def test_f_contiguous_array(self):
f_contiguous_array = np.array([[1, 2, 3], [4, 5, 6]], order='F')
buffers = []
# When using pickle protocol 5, Fortran-contiguous arrays can be
# serialized using out-of-band buffers
bytes_string = pickle.dumps(f_contiguous_array, protocol=5,
buffer_callback=buffers.append)
assert len(buffers) > 0
depickled_f_contiguous_array = pickle.loads(bytes_string,
buffers=buffers)
assert_equal(f_contiguous_array, depickled_f_contiguous_array)
def test_non_contiguous_array(self):
non_contiguous_array = np.arange(12).reshape(3, 4)[:, :2]
assert not non_contiguous_array.flags.c_contiguous
assert not non_contiguous_array.flags.f_contiguous
# make sure non-contiguous arrays can be pickled-depickled
# using any protocol
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
depickled_non_contiguous_array = pickle.loads(
pickle.dumps(non_contiguous_array, protocol=proto))
assert_equal(non_contiguous_array, depickled_non_contiguous_array)
def test_roundtrip(self):
for proto in range(2, pickle.HIGHEST_PROTOCOL + 1):
carray = np.array([[2, 9], [7, 0], [3, 8]])
DATA = [
carray,
np.transpose(carray),
np.array([('xxx', 1, 2.0)], dtype=[('a', (str, 3)), ('b', int),
('c', float)])
]
refs = [weakref.ref(a) for a in DATA]
for a in DATA:
assert_equal(
a, pickle.loads(pickle.dumps(a, protocol=proto)),
err_msg="%r" % a)
del a, DATA, carray
break_cycles()
# check for reference leaks (gh-12793)
for ref in refs:
assert ref() is None
def _loads(self, obj):
return pickle.loads(obj, encoding='latin1')
# version 0 pickles, using protocol=2 to pickle
# version 0 doesn't have a version field
def test_version0_int8(self):
s = b'\x80\x02cnumpy.core._internal\n_reconstruct\nq\x01cnumpy\nndarray\nq\x02K\x00\x85U\x01b\x87Rq\x03(K\x04\x85cnumpy\ndtype\nq\x04U\x02i1K\x00K\x01\x87Rq\x05(U\x01|NNJ\xff\xff\xff\xffJ\xff\xff\xff\xfftb\x89U\x04\x01\x02\x03\x04tb.'
a = np.array([1, 2, 3, 4], dtype=np.int8)
p = self._loads(s)
assert_equal(a, p)
def test_version0_float32(self):
s = b'\x80\x02cnumpy.core._internal\n_reconstruct\nq\x01cnumpy\nndarray\nq\x02K\x00\x85U\x01b\x87Rq\x03(K\x04\x85cnumpy\ndtype\nq\x04U\x02f4K\x00K\x01\x87Rq\x05(U\x01<NNJ\xff\xff\xff\xffJ\xff\xff\xff\xfftb\x89U\x10\x00\x00\x80?\x00\x00\x00@\x00\x00@@\x00\x00\x80@tb.'
a = np.array([1.0, 2.0, 3.0, 4.0], dtype=np.float32)
p = self._loads(s)
assert_equal(a, p)
def test_version0_object(self):
s = b'\x80\x02cnumpy.core._internal\n_reconstruct\nq\x01cnumpy\nndarray\nq\x02K\x00\x85U\x01b\x87Rq\x03(K\x02\x85cnumpy\ndtype\nq\x04U\x02O8K\x00K\x01\x87Rq\x05(U\x01|NNJ\xff\xff\xff\xffJ\xff\xff\xff\xfftb\x89]q\x06(}q\x07U\x01aK\x01s}q\x08U\x01bK\x02setb.'
a = np.array([{'a': 1}, {'b': 2}])
p = self._loads(s)
assert_equal(a, p)
# version 1 pickles, using protocol=2 to pickle
def test_version1_int8(self):
s = b'\x80\x02cnumpy.core._internal\n_reconstruct\nq\x01cnumpy\nndarray\nq\x02K\x00\x85U\x01b\x87Rq\x03(K\x01K\x04\x85cnumpy\ndtype\nq\x04U\x02i1K\x00K\x01\x87Rq\x05(K\x01U\x01|NNJ\xff\xff\xff\xffJ\xff\xff\xff\xfftb\x89U\x04\x01\x02\x03\x04tb.'
a = np.array([1, 2, 3, 4], dtype=np.int8)
p = self._loads(s)
assert_equal(a, p)
def test_version1_float32(self):
s = b'\x80\x02cnumpy.core._internal\n_reconstruct\nq\x01cnumpy\nndarray\nq\x02K\x00\x85U\x01b\x87Rq\x03(K\x01K\x04\x85cnumpy\ndtype\nq\x04U\x02f4K\x00K\x01\x87Rq\x05(K\x01U\x01<NNJ\xff\xff\xff\xffJ\xff\xff\xff\xfftb\x89U\x10\x00\x00\x80?\x00\x00\x00@\x00\x00@@\x00\x00\x80@tb.'
a = np.array([1.0, 2.0, 3.0, 4.0], dtype=np.float32)
p = self._loads(s)
assert_equal(a, p)
def test_version1_object(self):
s = b'\x80\x02cnumpy.core._internal\n_reconstruct\nq\x01cnumpy\nndarray\nq\x02K\x00\x85U\x01b\x87Rq\x03(K\x01K\x02\x85cnumpy\ndtype\nq\x04U\x02O8K\x00K\x01\x87Rq\x05(K\x01U\x01|NNJ\xff\xff\xff\xffJ\xff\xff\xff\xfftb\x89]q\x06(}q\x07U\x01aK\x01s}q\x08U\x01bK\x02setb.'
a = np.array([{'a': 1}, {'b': 2}])
p = self._loads(s)
assert_equal(a, p)
def test_subarray_int_shape(self):
s = b"cnumpy.core.multiarray\n_reconstruct\np0\n(cnumpy\nndarray\np1\n(I0\ntp2\nS'b'\np3\ntp4\nRp5\n(I1\n(I1\ntp6\ncnumpy\ndtype\np7\n(S'V6'\np8\nI0\nI1\ntp9\nRp10\n(I3\nS'|'\np11\nN(S'a'\np12\ng3\ntp13\n(dp14\ng12\n(g7\n(S'V4'\np15\nI0\nI1\ntp16\nRp17\n(I3\nS'|'\np18\n(g7\n(S'i1'\np19\nI0\nI1\ntp20\nRp21\n(I3\nS'|'\np22\nNNNI-1\nI-1\nI0\ntp23\nb(I2\nI2\ntp24\ntp25\nNNI4\nI1\nI0\ntp26\nbI0\ntp27\nsg3\n(g7\n(S'V2'\np28\nI0\nI1\ntp29\nRp30\n(I3\nS'|'\np31\n(g21\nI2\ntp32\nNNI2\nI1\nI0\ntp33\nbI4\ntp34\nsI6\nI1\nI0\ntp35\nbI00\nS'\\x01\\x01\\x01\\x01\\x01\\x02'\np36\ntp37\nb."
a = np.array([(1, (1, 2))], dtype=[('a', 'i1', (2, 2)), ('b', 'i1', 2)])
p = self._loads(s)
assert_equal(a, p)
def test_datetime64_byteorder(self):
original = np.array([['2015-02-24T00:00:00.000000000']], dtype='datetime64[ns]')
original_byte_reversed = original.copy(order='K')
original_byte_reversed.dtype = original_byte_reversed.dtype.newbyteorder('S')
original_byte_reversed.byteswap(inplace=True)
new = pickle.loads(pickle.dumps(original_byte_reversed))
assert_equal(original.dtype, new.dtype)
class TestFancyIndexing:
def test_list(self):
x = np.ones((1, 1))
x[:, [0]] = 2.0
assert_array_equal(x, np.array([[2.0]]))
x = np.ones((1, 1, 1))
x[:, :, [0]] = 2.0
assert_array_equal(x, np.array([[[2.0]]]))
def test_tuple(self):
x = np.ones((1, 1))
x[:, (0,)] = 2.0
assert_array_equal(x, np.array([[2.0]]))
x = np.ones((1, 1, 1))
x[:, :, (0,)] = 2.0
assert_array_equal(x, np.array([[[2.0]]]))
def test_mask(self):
x = np.array([1, 2, 3, 4])
m = np.array([0, 1, 0, 0], bool)
assert_array_equal(x[m], np.array([2]))
def test_mask2(self):
x = np.array([[1, 2, 3, 4], [5, 6, 7, 8]])
m = np.array([0, 1], bool)
m2 = np.array([[0, 1, 0, 0], [1, 0, 0, 0]], bool)
m3 = np.array([[0, 1, 0, 0], [0, 0, 0, 0]], bool)
assert_array_equal(x[m], np.array([[5, 6, 7, 8]]))
assert_array_equal(x[m2], np.array([2, 5]))
assert_array_equal(x[m3], np.array([2]))
def test_assign_mask(self):
x = np.array([1, 2, 3, 4])
m = np.array([0, 1, 0, 0], bool)
x[m] = 5
assert_array_equal(x, np.array([1, 5, 3, 4]))
def test_assign_mask2(self):
xorig = np.array([[1, 2, 3, 4], [5, 6, 7, 8]])
m = np.array([0, 1], bool)
m2 = np.array([[0, 1, 0, 0], [1, 0, 0, 0]], bool)
m3 = np.array([[0, 1, 0, 0], [0, 0, 0, 0]], bool)
x = xorig.copy()
x[m] = 10
assert_array_equal(x, np.array([[1, 2, 3, 4], [10, 10, 10, 10]]))
x = xorig.copy()
x[m2] = 10
assert_array_equal(x, np.array([[1, 10, 3, 4], [10, 6, 7, 8]]))
x = xorig.copy()
x[m3] = 10
assert_array_equal(x, np.array([[1, 10, 3, 4], [5, 6, 7, 8]]))
class TestStringCompare:
def test_string(self):
g1 = np.array(["This", "is", "example"])
g2 = np.array(["This", "was", "example"])
assert_array_equal(g1 == g2, [g1[i] == g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 != g2, [g1[i] != g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 <= g2, [g1[i] <= g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 >= g2, [g1[i] >= g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 < g2, [g1[i] < g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 > g2, [g1[i] > g2[i] for i in [0, 1, 2]])
def test_mixed(self):
g1 = np.array(["spam", "spa", "spammer", "and eggs"])
g2 = "spam"
assert_array_equal(g1 == g2, [x == g2 for x in g1])
assert_array_equal(g1 != g2, [x != g2 for x in g1])
assert_array_equal(g1 < g2, [x < g2 for x in g1])
assert_array_equal(g1 > g2, [x > g2 for x in g1])
assert_array_equal(g1 <= g2, [x <= g2 for x in g1])
assert_array_equal(g1 >= g2, [x >= g2 for x in g1])
def test_unicode(self):
g1 = np.array([u"This", u"is", u"example"])
g2 = np.array([u"This", u"was", u"example"])
assert_array_equal(g1 == g2, [g1[i] == g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 != g2, [g1[i] != g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 <= g2, [g1[i] <= g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 >= g2, [g1[i] >= g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 < g2, [g1[i] < g2[i] for i in [0, 1, 2]])
assert_array_equal(g1 > g2, [g1[i] > g2[i] for i in [0, 1, 2]])
class TestArgmax:
nan_arr = [
([0, 1, 2, 3, np.nan], 4),
([0, 1, 2, np.nan, 3], 3),
([np.nan, 0, 1, 2, 3], 0),
([np.nan, 0, np.nan, 2, 3], 0),
([0, 1, 2, 3, complex(0, np.nan)], 4),
([0, 1, 2, 3, complex(np.nan, 0)], 4),
([0, 1, 2, complex(np.nan, 0), 3], 3),
([0, 1, 2, complex(0, np.nan), 3], 3),
([complex(0, np.nan), 0, 1, 2, 3], 0),
([complex(np.nan, np.nan), 0, 1, 2, 3], 0),
([complex(np.nan, 0), complex(np.nan, 2), complex(np.nan, 1)], 0),
([complex(np.nan, np.nan), complex(np.nan, 2), complex(np.nan, 1)], 0),
([complex(np.nan, 0), complex(np.nan, 2), complex(np.nan, np.nan)], 0),
([complex(0, 0), complex(0, 2), complex(0, 1)], 1),
([complex(1, 0), complex(0, 2), complex(0, 1)], 0),
([complex(1, 0), complex(0, 2), complex(1, 1)], 2),
([np.datetime64('1923-04-14T12:43:12'),
np.datetime64('1994-06-21T14:43:15'),
np.datetime64('2001-10-15T04:10:32'),
np.datetime64('1995-11-25T16:02:16'),
np.datetime64('2005-01-04T03:14:12'),
np.datetime64('2041-12-03T14:05:03')], 5),
([np.datetime64('1935-09-14T04:40:11'),
np.datetime64('1949-10-12T12:32:11'),
np.datetime64('2010-01-03T05:14:12'),
np.datetime64('2015-11-20T12:20:59'),
np.datetime64('1932-09-23T10:10:13'),
np.datetime64('2014-10-10T03:50:30')], 3),
# Assorted tests with NaTs
([np.datetime64('NaT'),
np.datetime64('NaT'),
np.datetime64('2010-01-03T05:14:12'),
np.datetime64('NaT'),
np.datetime64('2015-09-23T10:10:13'),
np.datetime64('1932-10-10T03:50:30')], 0),
([np.datetime64('2059-03-14T12:43:12'),
np.datetime64('1996-09-21T14:43:15'),
np.datetime64('NaT'),
np.datetime64('2022-12-25T16:02:16'),
np.datetime64('1963-10-04T03:14:12'),
np.datetime64('2013-05-08T18:15:23')], 2),
([np.timedelta64(2, 's'),
np.timedelta64(1, 's'),
np.timedelta64('NaT', 's'),
np.timedelta64(3, 's')], 2),
([np.timedelta64('NaT', 's')] * 3, 0),
([timedelta(days=5, seconds=14), timedelta(days=2, seconds=35),
timedelta(days=-1, seconds=23)], 0),
([timedelta(days=1, seconds=43), timedelta(days=10, seconds=5),
timedelta(days=5, seconds=14)], 1),
([timedelta(days=10, seconds=24), timedelta(days=10, seconds=5),
timedelta(days=10, seconds=43)], 2),
([False, False, False, False, True], 4),
([False, False, False, True, False], 3),
([True, False, False, False, False], 0),
([True, False, True, False, False], 0),
]
def test_all(self):
a = np.random.normal(0, 1, (4, 5, 6, 7, 8))
for i in range(a.ndim):
amax = a.max(i)
aargmax = a.argmax(i)
axes = list(range(a.ndim))
axes.remove(i)
assert_(np.all(amax == aargmax.choose(*a.transpose(i,*axes))))
def test_combinations(self):
for arr, pos in self.nan_arr:
with suppress_warnings() as sup:
sup.filter(RuntimeWarning,
"invalid value encountered in reduce")
max_val = np.max(arr)
assert_equal(np.argmax(arr), pos, err_msg="%r" % arr)
assert_equal(arr[np.argmax(arr)], max_val, err_msg="%r" % arr)
def test_output_shape(self):
# see also gh-616
a = np.ones((10, 5))
# Check some simple shape mismatches
out = np.ones(11, dtype=np.int_)
assert_raises(ValueError, a.argmax, -1, out)
out = np.ones((2, 5), dtype=np.int_)
assert_raises(ValueError, a.argmax, -1, out)
# these could be relaxed possibly (used to allow even the previous)
out = np.ones((1, 10), dtype=np.int_)
assert_raises(ValueError, a.argmax, -1, out)
out = np.ones(10, dtype=np.int_)
a.argmax(-1, out=out)
assert_equal(out, a.argmax(-1))
def test_argmax_unicode(self):
d = np.zeros(6031, dtype='<U9')
d[5942] = "as"
assert_equal(d.argmax(), 5942)
def test_np_vs_ndarray(self):
# make sure both ndarray.argmax and numpy.argmax support out/axis args
a = np.random.normal(size=(2,3))
# check positional args
out1 = np.zeros(2, dtype=int)
out2 = np.zeros(2, dtype=int)
assert_equal(a.argmax(1, out1), np.argmax(a, 1, out2))
assert_equal(out1, out2)
# check keyword args
out1 = np.zeros(3, dtype=int)
out2 = np.zeros(3, dtype=int)
assert_equal(a.argmax(out=out1, axis=0), np.argmax(a, out=out2, axis=0))
assert_equal(out1, out2)
@pytest.mark.leaks_references(reason="replaces None with NULL.")
def test_object_argmax_with_NULLs(self):
# See gh-6032
a = np.empty(4, dtype='O')
ctypes.memset(a.ctypes.data, 0, a.nbytes)
assert_equal(a.argmax(), 0)
a[3] = 10
assert_equal(a.argmax(), 3)
a[1] = 30
assert_equal(a.argmax(), 1)
class TestArgmin:
nan_arr = [
([0, 1, 2, 3, np.nan], 4),
([0, 1, 2, np.nan, 3], 3),
([np.nan, 0, 1, 2, 3], 0),
([np.nan, 0, np.nan, 2, 3], 0),
([0, 1, 2, 3, complex(0, np.nan)], 4),
([0, 1, 2, 3, complex(np.nan, 0)], 4),
([0, 1, 2, complex(np.nan, 0), 3], 3),
([0, 1, 2, complex(0, np.nan), 3], 3),
([complex(0, np.nan), 0, 1, 2, 3], 0),
([complex(np.nan, np.nan), 0, 1, 2, 3], 0),
([complex(np.nan, 0), complex(np.nan, 2), complex(np.nan, 1)], 0),
([complex(np.nan, np.nan), complex(np.nan, 2), complex(np.nan, 1)], 0),
([complex(np.nan, 0), complex(np.nan, 2), complex(np.nan, np.nan)], 0),
([complex(0, 0), complex(0, 2), complex(0, 1)], 0),
([complex(1, 0), complex(0, 2), complex(0, 1)], 2),
([complex(1, 0), complex(0, 2), complex(1, 1)], 1),
([np.datetime64('1923-04-14T12:43:12'),
np.datetime64('1994-06-21T14:43:15'),
np.datetime64('2001-10-15T04:10:32'),
np.datetime64('1995-11-25T16:02:16'),
np.datetime64('2005-01-04T03:14:12'),
np.datetime64('2041-12-03T14:05:03')], 0),
([np.datetime64('1935-09-14T04:40:11'),
np.datetime64('1949-10-12T12:32:11'),
np.datetime64('2010-01-03T05:14:12'),
np.datetime64('2014-11-20T12:20:59'),
np.datetime64('2015-09-23T10:10:13'),
np.datetime64('1932-10-10T03:50:30')], 5),
# Assorted tests with NaTs
([np.datetime64('NaT'),
np.datetime64('NaT'),
np.datetime64('2010-01-03T05:14:12'),
np.datetime64('NaT'),
np.datetime64('2015-09-23T10:10:13'),
np.datetime64('1932-10-10T03:50:30')], 0),
([np.datetime64('2059-03-14T12:43:12'),
np.datetime64('1996-09-21T14:43:15'),
np.datetime64('NaT'),
np.datetime64('2022-12-25T16:02:16'),
np.datetime64('1963-10-04T03:14:12'),
np.datetime64('2013-05-08T18:15:23')], 2),
([np.timedelta64(2, 's'),
np.timedelta64(1, 's'),
np.timedelta64('NaT', 's'),
np.timedelta64(3, 's')], 2),
([np.timedelta64('NaT', 's')] * 3, 0),
([timedelta(days=5, seconds=14), timedelta(days=2, seconds=35),
timedelta(days=-1, seconds=23)], 2),
([timedelta(days=1, seconds=43), timedelta(days=10, seconds=5),
timedelta(days=5, seconds=14)], 0),
([timedelta(days=10, seconds=24), timedelta(days=10, seconds=5),
timedelta(days=10, seconds=43)], 1),
([True, True, True, True, False], 4),
([True, True, True, False, True], 3),
([False, True, True, True, True], 0),
([False, True, False, True, True], 0),
]
def test_all(self):
a = np.random.normal(0, 1, (4, 5, 6, 7, 8))
for i in range(a.ndim):
amin = a.min(i)
aargmin = a.argmin(i)
axes = list(range(a.ndim))
axes.remove(i)
assert_(np.all(amin == aargmin.choose(*a.transpose(i,*axes))))
def test_combinations(self):
for arr, pos in self.nan_arr:
with suppress_warnings() as sup:
sup.filter(RuntimeWarning,
"invalid value encountered in reduce")
min_val = np.min(arr)
assert_equal(np.argmin(arr), pos, err_msg="%r" % arr)
assert_equal(arr[np.argmin(arr)], min_val, err_msg="%r" % arr)
def test_minimum_signed_integers(self):
a = np.array([1, -2**7, -2**7 + 1], dtype=np.int8)
assert_equal(np.argmin(a), 1)
a = np.array([1, -2**15, -2**15 + 1], dtype=np.int16)
assert_equal(np.argmin(a), 1)
a = np.array([1, -2**31, -2**31 + 1], dtype=np.int32)
assert_equal(np.argmin(a), 1)
a = np.array([1, -2**63, -2**63 + 1], dtype=np.int64)
assert_equal(np.argmin(a), 1)
def test_output_shape(self):
# see also gh-616
a = np.ones((10, 5))
# Check some simple shape mismatches
out = np.ones(11, dtype=np.int_)
assert_raises(ValueError, a.argmin, -1, out)
out = np.ones((2, 5), dtype=np.int_)
assert_raises(ValueError, a.argmin, -1, out)
# these could be relaxed possibly (used to allow even the previous)
out = np.ones((1, 10), dtype=np.int_)
assert_raises(ValueError, a.argmin, -1, out)
out = np.ones(10, dtype=np.int_)
a.argmin(-1, out=out)
assert_equal(out, a.argmin(-1))
def test_argmin_unicode(self):
d = np.ones(6031, dtype='<U9')
d[6001] = "0"
assert_equal(d.argmin(), 6001)
def test_np_vs_ndarray(self):
# make sure both ndarray.argmin and numpy.argmin support out/axis args
a = np.random.normal(size=(2, 3))
# check positional args
out1 = np.zeros(2, dtype=int)
out2 = np.ones(2, dtype=int)
assert_equal(a.argmin(1, out1), np.argmin(a, 1, out2))
assert_equal(out1, out2)
# check keyword args
out1 = np.zeros(3, dtype=int)
out2 = np.ones(3, dtype=int)
assert_equal(a.argmin(out=out1, axis=0), np.argmin(a, out=out2, axis=0))
assert_equal(out1, out2)
@pytest.mark.leaks_references(reason="replaces None with NULL.")
def test_object_argmin_with_NULLs(self):
# See gh-6032
a = np.empty(4, dtype='O')
ctypes.memset(a.ctypes.data, 0, a.nbytes)
assert_equal(a.argmin(), 0)
a[3] = 30
assert_equal(a.argmin(), 3)
a[1] = 10
assert_equal(a.argmin(), 1)
class TestMinMax:
def test_scalar(self):
assert_raises(np.AxisError, np.amax, 1, 1)
assert_raises(np.AxisError, np.amin, 1, 1)
assert_equal(np.amax(1, axis=0), 1)
assert_equal(np.amin(1, axis=0), 1)
assert_equal(np.amax(1, axis=None), 1)
assert_equal(np.amin(1, axis=None), 1)
def test_axis(self):
assert_raises(np.AxisError, np.amax, [1, 2, 3], 1000)
assert_equal(np.amax([[1, 2, 3]], axis=1), 3)
def test_datetime(self):
# Do not ignore NaT
for dtype in ('m8[s]', 'm8[Y]'):
a = np.arange(10).astype(dtype)
assert_equal(np.amin(a), a[0])
assert_equal(np.amax(a), a[9])
a[3] = 'NaT'
assert_equal(np.amin(a), a[3])
assert_equal(np.amax(a), a[3])
class TestNewaxis:
def test_basic(self):
sk = np.array([0, -0.1, 0.1])
res = 250*sk[:, np.newaxis]
assert_almost_equal(res.ravel(), 250*sk)
class TestClip:
def _check_range(self, x, cmin, cmax):
assert_(np.all(x >= cmin))
assert_(np.all(x <= cmax))
def _clip_type(self, type_group, array_max,
clip_min, clip_max, inplace=False,
expected_min=None, expected_max=None):
if expected_min is None:
expected_min = clip_min
if expected_max is None:
expected_max = clip_max
for T in np.sctypes[type_group]:
if sys.byteorder == 'little':
byte_orders = ['=', '>']
else:
byte_orders = ['<', '=']
for byteorder in byte_orders:
dtype = np.dtype(T).newbyteorder(byteorder)
x = (np.random.random(1000) * array_max).astype(dtype)
if inplace:
# The tests that call us pass clip_min and clip_max that
# might not fit in the destination dtype. They were written
# assuming the previous unsafe casting, which now must be
# passed explicitly to avoid a warning.
x.clip(clip_min, clip_max, x, casting='unsafe')
else:
x = x.clip(clip_min, clip_max)
byteorder = '='
if x.dtype.byteorder == '|':
byteorder = '|'
assert_equal(x.dtype.byteorder, byteorder)
self._check_range(x, expected_min, expected_max)
return x
def test_basic(self):
for inplace in [False, True]:
self._clip_type(
'float', 1024, -12.8, 100.2, inplace=inplace)
self._clip_type(
'float', 1024, 0, 0, inplace=inplace)
self._clip_type(
'int', 1024, -120, 100, inplace=inplace)
self._clip_type(
'int', 1024, 0, 0, inplace=inplace)
self._clip_type(
'uint', 1024, 0, 0, inplace=inplace)
self._clip_type(
'uint', 1024, -120, 100, inplace=inplace, expected_min=0)
def test_record_array(self):
rec = np.array([(-5, 2.0, 3.0), (5.0, 4.0, 3.0)],
dtype=[('x', '<f8'), ('y', '<f8'), ('z', '<f8')])
y = rec['x'].clip(-0.3, 0.5)
self._check_range(y, -0.3, 0.5)
def test_max_or_min(self):
val = np.array([0, 1, 2, 3, 4, 5, 6, 7])
x = val.clip(3)
assert_(np.all(x >= 3))
x = val.clip(min=3)
assert_(np.all(x >= 3))
x = val.clip(max=4)
assert_(np.all(x <= 4))
def test_nan(self):
input_arr = np.array([-2., np.nan, 0.5, 3., 0.25, np.nan])
result = input_arr.clip(-1, 1)
expected = np.array([-1., np.nan, 0.5, 1., 0.25, np.nan])
assert_array_equal(result, expected)
class TestCompress:
def test_axis(self):
tgt = [[5, 6, 7, 8, 9]]
arr = np.arange(10).reshape(2, 5)
out = np.compress([0, 1], arr, axis=0)
assert_equal(out, tgt)
tgt = [[1, 3], [6, 8]]
out = np.compress([0, 1, 0, 1, 0], arr, axis=1)
assert_equal(out, tgt)
def test_truncate(self):
tgt = [[1], [6]]
arr = np.arange(10).reshape(2, 5)
out = np.compress([0, 1], arr, axis=1)
assert_equal(out, tgt)
def test_flatten(self):
arr = np.arange(10).reshape(2, 5)
out = np.compress([0, 1], arr)
assert_equal(out, 1)
class TestPutmask:
def tst_basic(self, x, T, mask, val):
np.putmask(x, mask, val)
assert_equal(x[mask], np.array(val, T))
def test_ip_types(self):
unchecked_types = [bytes, str, np.void]
x = np.random.random(1000)*100
mask = x < 40
for val in [-100, 0, 15]:
for types in np.sctypes.values():
for T in types:
if T not in unchecked_types:
self.tst_basic(x.copy().astype(T), T, mask, val)
# Also test string of a length which uses an untypical length
dt = np.dtype("S3")
self.tst_basic(x.astype(dt), dt.type, mask, dt.type(val)[:3])
def test_mask_size(self):
assert_raises(ValueError, np.putmask, np.array([1, 2, 3]), [True], 5)
@pytest.mark.parametrize('dtype', ('>i4', '<i4'))
def test_byteorder(self, dtype):
x = np.array([1, 2, 3], dtype)
np.putmask(x, [True, False, True], -1)
assert_array_equal(x, [-1, 2, -1])
def test_record_array(self):
# Note mixed byteorder.
rec = np.array([(-5, 2.0, 3.0), (5.0, 4.0, 3.0)],
dtype=[('x', '<f8'), ('y', '>f8'), ('z', '<f8')])
np.putmask(rec['x'], [True, False], 10)
assert_array_equal(rec['x'], [10, 5])
assert_array_equal(rec['y'], [2, 4])
assert_array_equal(rec['z'], [3, 3])
np.putmask(rec['y'], [True, False], 11)
assert_array_equal(rec['x'], [10, 5])
assert_array_equal(rec['y'], [11, 4])
assert_array_equal(rec['z'], [3, 3])
def test_overlaps(self):
# gh-6272 check overlap
x = np.array([True, False, True, False])
np.putmask(x[1:4], [True, True, True], x[:3])
assert_equal(x, np.array([True, True, False, True]))
x = np.array([True, False, True, False])
np.putmask(x[1:4], x[:3], [True, False, True])
assert_equal(x, np.array([True, True, True, True]))
class TestTake:
def tst_basic(self, x):
ind = list(range(x.shape[0]))
assert_array_equal(x.take(ind, axis=0), x)
def test_ip_types(self):
unchecked_types = [bytes, str, np.void]
x = np.random.random(24)*100
x.shape = 2, 3, 4
for types in np.sctypes.values():
for T in types:
if T not in unchecked_types:
self.tst_basic(x.copy().astype(T))
# Also test string of a length which uses an untypical length
self.tst_basic(x.astype("S3"))
def test_raise(self):
x = np.random.random(24)*100
x.shape = 2, 3, 4
assert_raises(IndexError, x.take, [0, 1, 2], axis=0)
assert_raises(IndexError, x.take, [-3], axis=0)
assert_array_equal(x.take([-1], axis=0)[0], x[1])
def test_clip(self):
x = np.random.random(24)*100
x.shape = 2, 3, 4
assert_array_equal(x.take([-1], axis=0, mode='clip')[0], x[0])
assert_array_equal(x.take([2], axis=0, mode='clip')[0], x[1])
def test_wrap(self):
x = np.random.random(24)*100
x.shape = 2, 3, 4
assert_array_equal(x.take([-1], axis=0, mode='wrap')[0], x[1])
assert_array_equal(x.take([2], axis=0, mode='wrap')[0], x[0])
assert_array_equal(x.take([3], axis=0, mode='wrap')[0], x[1])
@pytest.mark.parametrize('dtype', ('>i4', '<i4'))
def test_byteorder(self, dtype):
x = np.array([1, 2, 3], dtype)
assert_array_equal(x.take([0, 2, 1]), [1, 3, 2])
def test_record_array(self):
# Note mixed byteorder.
rec = np.array([(-5, 2.0, 3.0), (5.0, 4.0, 3.0)],
dtype=[('x', '<f8'), ('y', '>f8'), ('z', '<f8')])
rec1 = rec.take([1])
assert_(rec1['x'] == 5.0 and rec1['y'] == 4.0)
def test_out_overlap(self):
# gh-6272 check overlap on out
x = np.arange(5)
y = np.take(x, [1, 2, 3], out=x[2:5], mode='wrap')
assert_equal(y, np.array([1, 2, 3]))
class TestLexsort:
@pytest.mark.parametrize('dtype',[
np.uint8, np.uint16, np.uint32, np.uint64,
np.int8, np.int16, np.int32, np.int64,
np.float16, np.float32, np.float64
])
def test_basic(self, dtype):
a = np.array([1, 2, 1, 3, 1, 5], dtype=dtype)
b = np.array([0, 4, 5, 6, 2, 3], dtype=dtype)
idx = np.lexsort((b, a))
expected_idx = np.array([0, 4, 2, 1, 3, 5])
assert_array_equal(idx, expected_idx)
assert_array_equal(a[idx], np.sort(a))
def test_mixed(self):
a = np.array([1, 2, 1, 3, 1, 5])
b = np.array([0, 4, 5, 6, 2, 3], dtype='datetime64[D]')
idx = np.lexsort((b, a))
expected_idx = np.array([0, 4, 2, 1, 3, 5])
assert_array_equal(idx, expected_idx)
def test_datetime(self):
a = np.array([0,0,0], dtype='datetime64[D]')
b = np.array([2,1,0], dtype='datetime64[D]')
idx = np.lexsort((b, a))
expected_idx = np.array([2, 1, 0])
assert_array_equal(idx, expected_idx)
a = np.array([0,0,0], dtype='timedelta64[D]')
b = np.array([2,1,0], dtype='timedelta64[D]')
idx = np.lexsort((b, a))
expected_idx = np.array([2, 1, 0])
assert_array_equal(idx, expected_idx)
def test_object(self): # gh-6312
a = np.random.choice(10, 1000)
b = np.random.choice(['abc', 'xy', 'wz', 'efghi', 'qwst', 'x'], 1000)
for u in a, b:
left = np.lexsort((u.astype('O'),))
right = np.argsort(u, kind='mergesort')
assert_array_equal(left, right)
for u, v in (a, b), (b, a):
idx = np.lexsort((u, v))
assert_array_equal(idx, np.lexsort((u.astype('O'), v)))
assert_array_equal(idx, np.lexsort((u, v.astype('O'))))
u, v = np.array(u, dtype='object'), np.array(v, dtype='object')
assert_array_equal(idx, np.lexsort((u, v)))
def test_invalid_axis(self): # gh-7528
x = np.linspace(0., 1., 42*3).reshape(42, 3)
assert_raises(np.AxisError, np.lexsort, x, axis=2)
class TestIO:
"""Test tofile, fromfile, tobytes, and fromstring"""
def setup(self):
shape = (2, 4, 3)
rand = np.random.random
self.x = rand(shape) + rand(shape).astype(complex)*1j
self.x[0,:, 1] = [np.nan, np.inf, -np.inf, np.nan]
self.dtype = self.x.dtype
self.tempdir = tempfile.mkdtemp()
self.filename = tempfile.mktemp(dir=self.tempdir)
def teardown(self):
shutil.rmtree(self.tempdir)
def test_nofile(self):
# this should probably be supported as a file
# but for now test for proper errors
b = io.BytesIO()
assert_raises(IOError, np.fromfile, b, np.uint8, 80)
d = np.ones(7)
assert_raises(IOError, lambda x: x.tofile(b), d)
def test_bool_fromstring(self):
v = np.array([True, False, True, False], dtype=np.bool_)
y = np.fromstring('1 0 -2.3 0.0', sep=' ', dtype=np.bool_)
assert_array_equal(v, y)
def test_uint64_fromstring(self):
d = np.fromstring("9923372036854775807 104783749223640",
dtype=np.uint64, sep=' ')
e = np.array([9923372036854775807, 104783749223640], dtype=np.uint64)
assert_array_equal(d, e)
def test_int64_fromstring(self):
d = np.fromstring("-25041670086757 104783749223640",
dtype=np.int64, sep=' ')
e = np.array([-25041670086757, 104783749223640], dtype=np.int64)
assert_array_equal(d, e)
def test_empty_files_binary(self):
with open(self.filename, 'w') as f:
pass
y = np.fromfile(self.filename)
assert_(y.size == 0, "Array not empty")
def test_empty_files_text(self):
with open(self.filename, 'wb') as f:
pass
y = np.fromfile(self.filename, sep=" ")
assert_(y.size == 0, "Array not empty")
def test_roundtrip_file(self):
with open(self.filename, 'wb') as f:
self.x.tofile(f)
# NB. doesn't work with flush+seek, due to use of C stdio
with open(self.filename, 'rb') as f:
y = np.fromfile(f, dtype=self.dtype)
assert_array_equal(y, self.x.flat)
def test_roundtrip_filename(self):
self.x.tofile(self.filename)
y = np.fromfile(self.filename, dtype=self.dtype)
assert_array_equal(y, self.x.flat)
def test_roundtrip_pathlib(self):
p = pathlib.Path(self.filename)
self.x.tofile(p)
y = np.fromfile(p, dtype=self.dtype)
assert_array_equal(y, self.x.flat)
def test_roundtrip_dump_pathlib(self):
p = pathlib.Path(self.filename)
self.x.dump(p)
y = np.load(p, allow_pickle=True)
assert_array_equal(y, self.x)
def test_roundtrip_binary_str(self):
s = self.x.tobytes()
y = np.frombuffer(s, dtype=self.dtype)
assert_array_equal(y, self.x.flat)
s = self.x.tobytes('F')
y = np.frombuffer(s, dtype=self.dtype)
assert_array_equal(y, self.x.flatten('F'))
def test_roundtrip_str(self):
x = self.x.real.ravel()
s = "@".join(map(str, x))
y = np.fromstring(s, sep="@")
# NB. str imbues less precision
nan_mask = ~np.isfinite(x)
assert_array_equal(x[nan_mask], y[nan_mask])
assert_array_almost_equal(x[~nan_mask], y[~nan_mask], decimal=5)
def test_roundtrip_repr(self):
x = self.x.real.ravel()
s = "@".join(map(repr, x))
y = np.fromstring(s, sep="@")
assert_array_equal(x, y)
def test_unseekable_fromfile(self):
# gh-6246
self.x.tofile(self.filename)
def fail(*args, **kwargs):
raise IOError('Can not tell or seek')
with io.open(self.filename, 'rb', buffering=0) as f:
f.seek = fail
f.tell = fail
assert_raises(IOError, np.fromfile, f, dtype=self.dtype)
def test_io_open_unbuffered_fromfile(self):
# gh-6632
self.x.tofile(self.filename)
with io.open(self.filename, 'rb', buffering=0) as f:
y = np.fromfile(f, dtype=self.dtype)
assert_array_equal(y, self.x.flat)
def test_largish_file(self):
# check the fallocate path on files > 16MB
d = np.zeros(4 * 1024 ** 2)
d.tofile(self.filename)
assert_equal(os.path.getsize(self.filename), d.nbytes)
assert_array_equal(d, np.fromfile(self.filename))
# check offset
with open(self.filename, "r+b") as f:
f.seek(d.nbytes)
d.tofile(f)
assert_equal(os.path.getsize(self.filename), d.nbytes * 2)
# check append mode (gh-8329)
open(self.filename, "w").close() # delete file contents
with open(self.filename, "ab") as f:
d.tofile(f)
assert_array_equal(d, np.fromfile(self.filename))
with open(self.filename, "ab") as f:
d.tofile(f)
assert_equal(os.path.getsize(self.filename), d.nbytes * 2)
def test_io_open_buffered_fromfile(self):
# gh-6632
self.x.tofile(self.filename)
with io.open(self.filename, 'rb', buffering=-1) as f:
y = np.fromfile(f, dtype=self.dtype)
assert_array_equal(y, self.x.flat)
def test_file_position_after_fromfile(self):
# gh-4118
sizes = [io.DEFAULT_BUFFER_SIZE//8,
io.DEFAULT_BUFFER_SIZE,
io.DEFAULT_BUFFER_SIZE*8]
for size in sizes:
with open(self.filename, 'wb') as f:
f.seek(size-1)
f.write(b'\0')
for mode in ['rb', 'r+b']:
err_msg = "%d %s" % (size, mode)
with open(self.filename, mode) as f:
f.read(2)
np.fromfile(f, dtype=np.float64, count=1)
pos = f.tell()
assert_equal(pos, 10, err_msg=err_msg)
def test_file_position_after_tofile(self):
# gh-4118
sizes = [io.DEFAULT_BUFFER_SIZE//8,
io.DEFAULT_BUFFER_SIZE,
io.DEFAULT_BUFFER_SIZE*8]
for size in sizes:
err_msg = "%d" % (size,)
with open(self.filename, 'wb') as f:
f.seek(size-1)
f.write(b'\0')
f.seek(10)
f.write(b'12')
np.array([0], dtype=np.float64).tofile(f)
pos = f.tell()
assert_equal(pos, 10 + 2 + 8, err_msg=err_msg)
with open(self.filename, 'r+b') as f:
f.read(2)
f.seek(0, 1) # seek between read&write required by ANSI C
np.array([0], dtype=np.float64).tofile(f)
pos = f.tell()
assert_equal(pos, 10, err_msg=err_msg)
def test_load_object_array_fromfile(self):
# gh-12300
with open(self.filename, 'w') as f:
# Ensure we have a file with consistent contents
pass
with open(self.filename, 'rb') as f:
assert_raises_regex(ValueError, "Cannot read into object array",
np.fromfile, f, dtype=object)
assert_raises_regex(ValueError, "Cannot read into object array",
np.fromfile, self.filename, dtype=object)
def test_fromfile_offset(self):
with open(self.filename, 'wb') as f:
self.x.tofile(f)
with open(self.filename, 'rb') as f:
y = np.fromfile(f, dtype=self.dtype, offset=0)
assert_array_equal(y, self.x.flat)
with open(self.filename, 'rb') as f:
count_items = len(self.x.flat) // 8
offset_items = len(self.x.flat) // 4
offset_bytes = self.dtype.itemsize * offset_items
y = np.fromfile(f, dtype=self.dtype, count=count_items, offset=offset_bytes)
assert_array_equal(y, self.x.flat[offset_items:offset_items+count_items])
# subsequent seeks should stack
offset_bytes = self.dtype.itemsize
z = np.fromfile(f, dtype=self.dtype, offset=offset_bytes)
assert_array_equal(z, self.x.flat[offset_items+count_items+1:])
with open(self.filename, 'wb') as f:
self.x.tofile(f, sep=",")
with open(self.filename, 'rb') as f:
assert_raises_regex(
TypeError,
"'offset' argument only permitted for binary files",
np.fromfile, self.filename, dtype=self.dtype,
sep=",", offset=1)
def _check_from(self, s, value, **kw):
if 'sep' not in kw:
y = np.frombuffer(s, **kw)
else:
y = np.fromstring(s, **kw)
assert_array_equal(y, value)
with open(self.filename, 'wb') as f:
f.write(s)
y = np.fromfile(self.filename, **kw)
assert_array_equal(y, value)
def test_nan(self):
self._check_from(
b"nan +nan -nan NaN nan(foo) +NaN(BAR) -NAN(q_u_u_x_)",
[np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan],
sep=' ')
def test_inf(self):
self._check_from(
b"inf +inf -inf infinity -Infinity iNfInItY -inF",
[np.inf, np.inf, -np.inf, np.inf, -np.inf, np.inf, -np.inf],
sep=' ')
def test_numbers(self):
self._check_from(b"1.234 -1.234 .3 .3e55 -123133.1231e+133",
[1.234, -1.234, .3, .3e55, -123133.1231e+133], sep=' ')
def test_binary(self):
self._check_from(b'\x00\x00\x80?\x00\x00\x00@\x00\x00@@\x00\x00\x80@',
np.array([1, 2, 3, 4]),
dtype='<f4')
@pytest.mark.slow # takes > 1 minute on mechanical hard drive
def test_big_binary(self):
"""Test workarounds for 32-bit limited fwrite, fseek, and ftell
calls in windows. These normally would hang doing something like this.
See http://projects.scipy.org/numpy/ticket/1660"""
if sys.platform != 'win32':
return
try:
# before workarounds, only up to 2**32-1 worked
fourgbplus = 2**32 + 2**16
testbytes = np.arange(8, dtype=np.int8)
n = len(testbytes)
flike = tempfile.NamedTemporaryFile()
f = flike.file
np.tile(testbytes, fourgbplus // testbytes.nbytes).tofile(f)
flike.seek(0)
a = np.fromfile(f, dtype=np.int8)
flike.close()
assert_(len(a) == fourgbplus)
# check only start and end for speed:
assert_((a[:n] == testbytes).all())
assert_((a[-n:] == testbytes).all())
except (MemoryError, ValueError):
pass
def test_string(self):
self._check_from(b'1,2,3,4', [1., 2., 3., 4.], sep=',')
def test_counted_string(self):
self._check_from(b'1,2,3,4', [1., 2., 3., 4.], count=4, sep=',')
self._check_from(b'1,2,3,4', [1., 2., 3.], count=3, sep=',')
self._check_from(b'1,2,3,4', [1., 2., 3., 4.], count=-1, sep=',')
def test_string_with_ws(self):
self._check_from(b'1 2 3 4 ', [1, 2, 3, 4], dtype=int, sep=' ')
def test_counted_string_with_ws(self):
self._check_from(b'1 2 3 4 ', [1, 2, 3], count=3, dtype=int,
sep=' ')
def test_ascii(self):
self._check_from(b'1 , 2 , 3 , 4', [1., 2., 3., 4.], sep=',')
self._check_from(b'1,2,3,4', [1., 2., 3., 4.], dtype=float, sep=',')
def test_malformed(self):
with assert_warns(DeprecationWarning):
self._check_from(b'1.234 1,234', [1.234, 1.], sep=' ')
def test_long_sep(self):
self._check_from(b'1_x_3_x_4_x_5', [1, 3, 4, 5], sep='_x_')
def test_dtype(self):
v = np.array([1, 2, 3, 4], dtype=np.int_)
self._check_from(b'1,2,3,4', v, sep=',', dtype=np.int_)
def test_dtype_bool(self):
# can't use _check_from because fromstring can't handle True/False
v = np.array([True, False, True, False], dtype=np.bool_)
s = b'1,0,-2.3,0'
with open(self.filename, 'wb') as f:
f.write(s)
y = np.fromfile(self.filename, sep=',', dtype=np.bool_)
assert_(y.dtype == '?')
assert_array_equal(y, v)
def test_tofile_sep(self):
x = np.array([1.51, 2, 3.51, 4], dtype=float)
with open(self.filename, 'w') as f:
x.tofile(f, sep=',')
with open(self.filename, 'r') as f:
s = f.read()
#assert_equal(s, '1.51,2.0,3.51,4.0')
y = np.array([float(p) for p in s.split(',')])
assert_array_equal(x,y)
def test_tofile_format(self):
x = np.array([1.51, 2, 3.51, 4], dtype=float)
with open(self.filename, 'w') as f:
x.tofile(f, sep=',', format='%.2f')
with open(self.filename, 'r') as f:
s = f.read()
assert_equal(s, '1.51,2.00,3.51,4.00')
def test_locale(self):
with CommaDecimalPointLocale():
self.test_numbers()
self.test_nan()
self.test_inf()
self.test_counted_string()
self.test_ascii()
self.test_malformed()
self.test_tofile_sep()
self.test_tofile_format()
def test_fromfile_subarray_binary(self):
# Test subarray dtypes which are absorbed into the shape
x = np.arange(24, dtype="i4").reshape(2, 3, 4)
x.tofile(self.filename)
res = np.fromfile(self.filename, dtype="(3,4)i4")
assert_array_equal(x, res)
x_str = x.tobytes()
with assert_warns(DeprecationWarning):
# binary fromstring is deprecated
res = np.fromstring(x_str, dtype="(3,4)i4")
assert_array_equal(x, res)
class TestFromBuffer:
@pytest.mark.parametrize('byteorder', ['<', '>'])
@pytest.mark.parametrize('dtype', [float, int, complex])
def test_basic(self, byteorder, dtype):
dt = np.dtype(dtype).newbyteorder(byteorder)
x = (np.random.random((4, 7)) * 5).astype(dt)
buf = x.tobytes()
assert_array_equal(np.frombuffer(buf, dtype=dt), x.flat)
def test_empty(self):
assert_array_equal(np.frombuffer(b''), np.array([]))
class TestFlat:
def setup(self):
a0 = np.arange(20.0)
a = a0.reshape(4, 5)
a0.shape = (4, 5)
a.flags.writeable = False
self.a = a
self.b = a[::2, ::2]
self.a0 = a0
self.b0 = a0[::2, ::2]
def test_contiguous(self):
testpassed = False
try:
self.a.flat[12] = 100.0
except ValueError:
testpassed = True
assert_(testpassed)
assert_(self.a.flat[12] == 12.0)
def test_discontiguous(self):
testpassed = False
try:
self.b.flat[4] = 100.0
except ValueError:
testpassed = True
assert_(testpassed)
assert_(self.b.flat[4] == 12.0)
def test___array__(self):
c = self.a.flat.__array__()
d = self.b.flat.__array__()
e = self.a0.flat.__array__()
f = self.b0.flat.__array__()
assert_(c.flags.writeable is False)
assert_(d.flags.writeable is False)
# for 1.14 all are set to non-writeable on the way to replacing the
# UPDATEIFCOPY array returned for non-contiguous arrays.
assert_(e.flags.writeable is True)
assert_(f.flags.writeable is False)
with assert_warns(DeprecationWarning):
assert_(c.flags.updateifcopy is False)
with assert_warns(DeprecationWarning):
assert_(d.flags.updateifcopy is False)
with assert_warns(DeprecationWarning):
assert_(e.flags.updateifcopy is False)
with assert_warns(DeprecationWarning):
# UPDATEIFCOPY is removed.
assert_(f.flags.updateifcopy is False)
assert_(c.flags.writebackifcopy is False)
assert_(d.flags.writebackifcopy is False)
assert_(e.flags.writebackifcopy is False)
assert_(f.flags.writebackifcopy is False)
@pytest.mark.skipif(not HAS_REFCOUNT, reason="Python lacks refcounts")
def test_refcount(self):
# includes regression test for reference count error gh-13165
inds = [np.intp(0), np.array([True]*self.a.size), np.array([0]), None]
indtype = np.dtype(np.intp)
rc_indtype = sys.getrefcount(indtype)
for ind in inds:
rc_ind = sys.getrefcount(ind)
for _ in range(100):
try:
self.a.flat[ind]
except IndexError:
pass
assert_(abs(sys.getrefcount(ind) - rc_ind) < 50)
assert_(abs(sys.getrefcount(indtype) - rc_indtype) < 50)
class TestResize:
@_no_tracing
def test_basic(self):
x = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
if IS_PYPY:
x.resize((5, 5), refcheck=False)
else:
x.resize((5, 5))
assert_array_equal(x.flat[:9],
np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]]).flat)
assert_array_equal(x[9:].flat, 0)
def test_check_reference(self):
x = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
y = x
assert_raises(ValueError, x.resize, (5, 1))
del y # avoid pyflakes unused variable warning.
@_no_tracing
def test_int_shape(self):
x = np.eye(3)
if IS_PYPY:
x.resize(3, refcheck=False)
else:
x.resize(3)
assert_array_equal(x, np.eye(3)[0,:])
def test_none_shape(self):
x = np.eye(3)
x.resize(None)
assert_array_equal(x, np.eye(3))
x.resize()
assert_array_equal(x, np.eye(3))
def test_0d_shape(self):
# to it multiple times to test it does not break alloc cache gh-9216
for i in range(10):
x = np.empty((1,))
x.resize(())
assert_equal(x.shape, ())
assert_equal(x.size, 1)
x = np.empty(())
x.resize((1,))
assert_equal(x.shape, (1,))
assert_equal(x.size, 1)
def test_invalid_arguments(self):
assert_raises(TypeError, np.eye(3).resize, 'hi')
assert_raises(ValueError, np.eye(3).resize, -1)
assert_raises(TypeError, np.eye(3).resize, order=1)
assert_raises(TypeError, np.eye(3).resize, refcheck='hi')
@_no_tracing
def test_freeform_shape(self):
x = np.eye(3)
if IS_PYPY:
x.resize(3, 2, 1, refcheck=False)
else:
x.resize(3, 2, 1)
assert_(x.shape == (3, 2, 1))
@_no_tracing
def test_zeros_appended(self):
x = np.eye(3)
if IS_PYPY:
x.resize(2, 3, 3, refcheck=False)
else:
x.resize(2, 3, 3)
assert_array_equal(x[0], np.eye(3))
assert_array_equal(x[1], np.zeros((3, 3)))
@_no_tracing
def test_obj_obj(self):
# check memory is initialized on resize, gh-4857
a = np.ones(10, dtype=[('k', object, 2)])
if IS_PYPY:
a.resize(15, refcheck=False)
else:
a.resize(15,)
assert_equal(a.shape, (15,))
assert_array_equal(a['k'][-5:], 0)
assert_array_equal(a['k'][:-5], 1)
def test_empty_view(self):
# check that sizes containing a zero don't trigger a reallocate for
# already empty arrays
x = np.zeros((10, 0), int)
x_view = x[...]
x_view.resize((0, 10))
x_view.resize((0, 100))
def test_check_weakref(self):
x = np.array([[1, 0, 0], [0, 1, 0], [0, 0, 1]])
xref = weakref.ref(x)
assert_raises(ValueError, x.resize, (5, 1))
del xref # avoid pyflakes unused variable warning.
class TestRecord:
def test_field_rename(self):
dt = np.dtype([('f', float), ('i', int)])
dt.names = ['p', 'q']
assert_equal(dt.names, ['p', 'q'])
def test_multiple_field_name_occurrence(self):
def test_dtype_init():
np.dtype([("A", "f8"), ("B", "f8"), ("A", "f8")])
# Error raised when multiple fields have the same name
assert_raises(ValueError, test_dtype_init)
def test_bytes_fields(self):
# Bytes are not allowed in field names and not recognized in titles
# on Py3
assert_raises(TypeError, np.dtype, [(b'a', int)])
assert_raises(TypeError, np.dtype, [(('b', b'a'), int)])
dt = np.dtype([((b'a', 'b'), int)])
assert_raises(TypeError, dt.__getitem__, b'a')
x = np.array([(1,), (2,), (3,)], dtype=dt)
assert_raises(IndexError, x.__getitem__, b'a')
y = x[0]
assert_raises(IndexError, y.__getitem__, b'a')
def test_multiple_field_name_unicode(self):
def test_dtype_unicode():
np.dtype([("\u20B9", "f8"), ("B", "f8"), ("\u20B9", "f8")])
# Error raised when multiple fields have the same name(unicode included)
assert_raises(ValueError, test_dtype_unicode)
def test_fromarrays_unicode(self):
# A single name string provided to fromarrays() is allowed to be unicode
# on both Python 2 and 3:
x = np.core.records.fromarrays([[0], [1]], names=u'a,b', formats=u'i4,i4')
assert_equal(x['a'][0], 0)
assert_equal(x['b'][0], 1)
def test_unicode_order(self):
# Test that we can sort with order as a unicode field name in both Python 2 and
# 3:
name = u'b'
x = np.array([1, 3, 2], dtype=[(name, int)])
x.sort(order=name)
assert_equal(x[u'b'], np.array([1, 2, 3]))
def test_field_names(self):
# Test unicode and 8-bit / byte strings can be used
a = np.zeros((1,), dtype=[('f1', 'i4'),
('f2', 'i4'),
('f3', [('sf1', 'i4')])])
# byte string indexing fails gracefully
assert_raises(IndexError, a.__setitem__, b'f1', 1)
assert_raises(IndexError, a.__getitem__, b'f1')
assert_raises(IndexError, a['f1'].__setitem__, b'sf1', 1)
assert_raises(IndexError, a['f1'].__getitem__, b'sf1')
b = a.copy()
fn1 = str('f1')
b[fn1] = 1
assert_equal(b[fn1], 1)
fnn = str('not at all')
assert_raises(ValueError, b.__setitem__, fnn, 1)
assert_raises(ValueError, b.__getitem__, fnn)
b[0][fn1] = 2
assert_equal(b[fn1], 2)
# Subfield
assert_raises(ValueError, b[0].__setitem__, fnn, 1)
assert_raises(ValueError, b[0].__getitem__, fnn)
# Subfield
fn3 = str('f3')
sfn1 = str('sf1')
b[fn3][sfn1] = 1
assert_equal(b[fn3][sfn1], 1)
assert_raises(ValueError, b[fn3].__setitem__, fnn, 1)
assert_raises(ValueError, b[fn3].__getitem__, fnn)
# multiple subfields
fn2 = str('f2')
b[fn2] = 3
assert_equal(b[['f1', 'f2']][0].tolist(), (2, 3))
assert_equal(b[['f2', 'f1']][0].tolist(), (3, 2))
assert_equal(b[['f1', 'f3']][0].tolist(), (2, (1,)))
# non-ascii unicode field indexing is well behaved
assert_raises(ValueError, a.__setitem__, u'\u03e0', 1)
assert_raises(ValueError, a.__getitem__, u'\u03e0')
def test_record_hash(self):
a = np.array([(1, 2), (1, 2)], dtype='i1,i2')
a.flags.writeable = False
b = np.array([(1, 2), (3, 4)], dtype=[('num1', 'i1'), ('num2', 'i2')])
b.flags.writeable = False
c = np.array([(1, 2), (3, 4)], dtype='i1,i2')
c.flags.writeable = False
assert_(hash(a[0]) == hash(a[1]))
assert_(hash(a[0]) == hash(b[0]))
assert_(hash(a[0]) != hash(b[1]))
assert_(hash(c[0]) == hash(a[0]) and c[0] == a[0])
def test_record_no_hash(self):
a = np.array([(1, 2), (1, 2)], dtype='i1,i2')
assert_raises(TypeError, hash, a[0])
def test_empty_structure_creation(self):
# make sure these do not raise errors (gh-5631)
np.array([()], dtype={'names': [], 'formats': [],
'offsets': [], 'itemsize': 12})
np.array([(), (), (), (), ()], dtype={'names': [], 'formats': [],
'offsets': [], 'itemsize': 12})
def test_multifield_indexing_view(self):
a = np.ones(3, dtype=[('a', 'i4'), ('b', 'f4'), ('c', 'u4')])
v = a[['a', 'c']]
assert_(v.base is a)
assert_(v.dtype == np.dtype({'names': ['a', 'c'],
'formats': ['i4', 'u4'],
'offsets': [0, 8]}))
v[:] = (4,5)
assert_equal(a[0].item(), (4, 1, 5))
class TestView:
def test_basic(self):
x = np.array([(1, 2, 3, 4), (5, 6, 7, 8)],
dtype=[('r', np.int8), ('g', np.int8),
('b', np.int8), ('a', np.int8)])
# We must be specific about the endianness here:
y = x.view(dtype='<i4')
# ... and again without the keyword.
z = x.view('<i4')
assert_array_equal(y, z)
assert_array_equal(y, [67305985, 134678021])
def _mean(a, **args):
return a.mean(**args)
def _var(a, **args):
return a.var(**args)
def _std(a, **args):
return a.std(**args)
class TestStats:
funcs = [_mean, _var, _std]
def setup(self):
np.random.seed(range(3))
self.rmat = np.random.random((4, 5))
self.cmat = self.rmat + 1j * self.rmat
self.omat = np.array([Decimal(repr(r)) for r in self.rmat.flat])
self.omat = self.omat.reshape(4, 5)
def test_python_type(self):
for x in (np.float16(1.), 1, 1., 1+0j):
assert_equal(np.mean([x]), 1.)
assert_equal(np.std([x]), 0.)
assert_equal(np.var([x]), 0.)
def test_keepdims(self):
mat = np.eye(3)
for f in self.funcs:
for axis in [0, 1]:
res = f(mat, axis=axis, keepdims=True)
assert_(res.ndim == mat.ndim)
assert_(res.shape[axis] == 1)
for axis in [None]:
res = f(mat, axis=axis, keepdims=True)
assert_(res.shape == (1, 1))
def test_out(self):
mat = np.eye(3)
for f in self.funcs:
out = np.zeros(3)
tgt = f(mat, axis=1)
res = f(mat, axis=1, out=out)
assert_almost_equal(res, out)
assert_almost_equal(res, tgt)
out = np.empty(2)
assert_raises(ValueError, f, mat, axis=1, out=out)
out = np.empty((2, 2))
assert_raises(ValueError, f, mat, axis=1, out=out)
def test_dtype_from_input(self):
icodes = np.typecodes['AllInteger']
fcodes = np.typecodes['AllFloat']
# object type
for f in self.funcs:
mat = np.array([[Decimal(1)]*3]*3)
tgt = mat.dtype.type
res = f(mat, axis=1).dtype.type
assert_(res is tgt)
# scalar case
res = type(f(mat, axis=None))
assert_(res is Decimal)
# integer types
for f in self.funcs:
for c in icodes:
mat = np.eye(3, dtype=c)
tgt = np.float64
res = f(mat, axis=1).dtype.type
assert_(res is tgt)
# scalar case
res = f(mat, axis=None).dtype.type
assert_(res is tgt)
# mean for float types
for f in [_mean]:
for c in fcodes:
mat = np.eye(3, dtype=c)
tgt = mat.dtype.type
res = f(mat, axis=1).dtype.type
assert_(res is tgt)
# scalar case
res = f(mat, axis=None).dtype.type
assert_(res is tgt)
# var, std for float types
for f in [_var, _std]:
for c in fcodes:
mat = np.eye(3, dtype=c)
# deal with complex types
tgt = mat.real.dtype.type
res = f(mat, axis=1).dtype.type
assert_(res is tgt)
# scalar case
res = f(mat, axis=None).dtype.type
assert_(res is tgt)
def test_dtype_from_dtype(self):
mat = np.eye(3)
# stats for integer types
# FIXME:
# this needs definition as there are lots places along the line
# where type casting may take place.
# for f in self.funcs:
# for c in np.typecodes['AllInteger']:
# tgt = np.dtype(c).type
# res = f(mat, axis=1, dtype=c).dtype.type
# assert_(res is tgt)
# # scalar case
# res = f(mat, axis=None, dtype=c).dtype.type
# assert_(res is tgt)
# stats for float types
for f in self.funcs:
for c in np.typecodes['AllFloat']:
tgt = np.dtype(c).type
res = f(mat, axis=1, dtype=c).dtype.type
assert_(res is tgt)
# scalar case
res = f(mat, axis=None, dtype=c).dtype.type
assert_(res is tgt)
def test_ddof(self):
for f in [_var]:
for ddof in range(3):
dim = self.rmat.shape[1]
tgt = f(self.rmat, axis=1) * dim
res = f(self.rmat, axis=1, ddof=ddof) * (dim - ddof)
for f in [_std]:
for ddof in range(3):
dim = self.rmat.shape[1]
tgt = f(self.rmat, axis=1) * np.sqrt(dim)
res = f(self.rmat, axis=1, ddof=ddof) * np.sqrt(dim - ddof)
assert_almost_equal(res, tgt)
assert_almost_equal(res, tgt)
def test_ddof_too_big(self):
dim = self.rmat.shape[1]
for f in [_var, _std]:
for ddof in range(dim, dim + 2):
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
res = f(self.rmat, axis=1, ddof=ddof)
assert_(not (res < 0).any())
assert_(len(w) > 0)
assert_(issubclass(w[0].category, RuntimeWarning))
def test_empty(self):
A = np.zeros((0, 3))
for f in self.funcs:
for axis in [0, None]:
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
assert_(np.isnan(f(A, axis=axis)).all())
assert_(len(w) > 0)
assert_(issubclass(w[0].category, RuntimeWarning))
for axis in [1]:
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
assert_equal(f(A, axis=axis), np.zeros([]))
def test_mean_values(self):
for mat in [self.rmat, self.cmat, self.omat]:
for axis in [0, 1]:
tgt = mat.sum(axis=axis)
res = _mean(mat, axis=axis) * mat.shape[axis]
assert_almost_equal(res, tgt)
for axis in [None]:
tgt = mat.sum(axis=axis)
res = _mean(mat, axis=axis) * np.prod(mat.shape)
assert_almost_equal(res, tgt)
def test_mean_float16(self):
# This fail if the sum inside mean is done in float16 instead
# of float32.
assert_(_mean(np.ones(100000, dtype='float16')) == 1)
def test_mean_axis_error(self):
# Ensure that AxisError is raised instead of IndexError when axis is
# out of bounds, see gh-15817.
with assert_raises(np.core._exceptions.AxisError):
np.arange(10).mean(axis=2)
def test_var_values(self):
for mat in [self.rmat, self.cmat, self.omat]:
for axis in [0, 1, None]:
msqr = _mean(mat * mat.conj(), axis=axis)
mean = _mean(mat, axis=axis)
tgt = msqr - mean * mean.conjugate()
res = _var(mat, axis=axis)
assert_almost_equal(res, tgt)
@pytest.mark.parametrize(('complex_dtype', 'ndec'), (
('complex64', 6),
('complex128', 7),
('clongdouble', 7),
))
def test_var_complex_values(self, complex_dtype, ndec):
# Test fast-paths for every builtin complex type
for axis in [0, 1, None]:
mat = self.cmat.copy().astype(complex_dtype)
msqr = _mean(mat * mat.conj(), axis=axis)
mean = _mean(mat, axis=axis)
tgt = msqr - mean * mean.conjugate()
res = _var(mat, axis=axis)
assert_almost_equal(res, tgt, decimal=ndec)
def test_var_dimensions(self):
# _var paths for complex number introduce additions on views that
# increase dimensions. Ensure this generalizes to higher dims
mat = np.stack([self.cmat]*3)
for axis in [0, 1, 2, -1, None]:
msqr = _mean(mat * mat.conj(), axis=axis)
mean = _mean(mat, axis=axis)
tgt = msqr - mean * mean.conjugate()
res = _var(mat, axis=axis)
assert_almost_equal(res, tgt)
def test_var_complex_byteorder(self):
# Test that var fast-path does not cause failures for complex arrays
# with non-native byteorder
cmat = self.cmat.copy().astype('complex128')
cmat_swapped = cmat.astype(cmat.dtype.newbyteorder())
assert_almost_equal(cmat.var(), cmat_swapped.var())
def test_var_axis_error(self):
# Ensure that AxisError is raised instead of IndexError when axis is
# out of bounds, see gh-15817.
with assert_raises(np.core._exceptions.AxisError):
np.arange(10).var(axis=2)
def test_std_values(self):
for mat in [self.rmat, self.cmat, self.omat]:
for axis in [0, 1, None]:
tgt = np.sqrt(_var(mat, axis=axis))
res = _std(mat, axis=axis)
assert_almost_equal(res, tgt)
def test_subclass(self):
class TestArray(np.ndarray):
def __new__(cls, data, info):
result = np.array(data)
result = result.view(cls)
result.info = info
return result
def __array_finalize__(self, obj):
self.info = getattr(obj, "info", '')
dat = TestArray([[1, 2, 3, 4], [5, 6, 7, 8]], 'jubba')
res = dat.mean(1)
assert_(res.info == dat.info)
res = dat.std(1)
assert_(res.info == dat.info)
res = dat.var(1)
assert_(res.info == dat.info)
class TestVdot:
def test_basic(self):
dt_numeric = np.typecodes['AllFloat'] + np.typecodes['AllInteger']
dt_complex = np.typecodes['Complex']
# test real
a = np.eye(3)
for dt in dt_numeric + 'O':
b = a.astype(dt)
res = np.vdot(b, b)
assert_(np.isscalar(res))
assert_equal(np.vdot(b, b), 3)
# test complex
a = np.eye(3) * 1j
for dt in dt_complex + 'O':
b = a.astype(dt)
res = np.vdot(b, b)
assert_(np.isscalar(res))
assert_equal(np.vdot(b, b), 3)
# test boolean
b = np.eye(3, dtype=bool)
res = np.vdot(b, b)
assert_(np.isscalar(res))
assert_equal(np.vdot(b, b), True)
def test_vdot_array_order(self):
a = np.array([[1, 2], [3, 4]], order='C')
b = np.array([[1, 2], [3, 4]], order='F')
res = np.vdot(a, a)
# integer arrays are exact
assert_equal(np.vdot(a, b), res)
assert_equal(np.vdot(b, a), res)
assert_equal(np.vdot(b, b), res)
def test_vdot_uncontiguous(self):
for size in [2, 1000]:
# Different sizes match different branches in vdot.
a = np.zeros((size, 2, 2))
b = np.zeros((size, 2, 2))
a[:, 0, 0] = np.arange(size)
b[:, 0, 0] = np.arange(size) + 1
# Make a and b uncontiguous:
a = a[..., 0]
b = b[..., 0]
assert_equal(np.vdot(a, b),
np.vdot(a.flatten(), b.flatten()))
assert_equal(np.vdot(a, b.copy()),
np.vdot(a.flatten(), b.flatten()))
assert_equal(np.vdot(a.copy(), b),
np.vdot(a.flatten(), b.flatten()))
assert_equal(np.vdot(a.copy('F'), b),
np.vdot(a.flatten(), b.flatten()))
assert_equal(np.vdot(a, b.copy('F')),
np.vdot(a.flatten(), b.flatten()))
class TestDot:
def setup(self):
np.random.seed(128)
self.A = np.random.rand(4, 2)
self.b1 = np.random.rand(2, 1)
self.b2 = np.random.rand(2)
self.b3 = np.random.rand(1, 2)
self.b4 = np.random.rand(4)
self.N = 7
def test_dotmatmat(self):
A = self.A
res = np.dot(A.transpose(), A)
tgt = np.array([[1.45046013, 0.86323640],
[0.86323640, 0.84934569]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotmatvec(self):
A, b1 = self.A, self.b1
res = np.dot(A, b1)
tgt = np.array([[0.32114320], [0.04889721],
[0.15696029], [0.33612621]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotmatvec2(self):
A, b2 = self.A, self.b2
res = np.dot(A, b2)
tgt = np.array([0.29677940, 0.04518649, 0.14468333, 0.31039293])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecmat(self):
A, b4 = self.A, self.b4
res = np.dot(b4, A)
tgt = np.array([1.23495091, 1.12222648])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecmat2(self):
b3, A = self.b3, self.A
res = np.dot(b3, A.transpose())
tgt = np.array([[0.58793804, 0.08957460, 0.30605758, 0.62716383]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecmat3(self):
A, b4 = self.A, self.b4
res = np.dot(A.transpose(), b4)
tgt = np.array([1.23495091, 1.12222648])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecvecouter(self):
b1, b3 = self.b1, self.b3
res = np.dot(b1, b3)
tgt = np.array([[0.20128610, 0.08400440], [0.07190947, 0.03001058]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecvecinner(self):
b1, b3 = self.b1, self.b3
res = np.dot(b3, b1)
tgt = np.array([[ 0.23129668]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotcolumnvect1(self):
b1 = np.ones((3, 1))
b2 = [5.3]
res = np.dot(b1, b2)
tgt = np.array([5.3, 5.3, 5.3])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotcolumnvect2(self):
b1 = np.ones((3, 1)).transpose()
b2 = [6.2]
res = np.dot(b2, b1)
tgt = np.array([6.2, 6.2, 6.2])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecscalar(self):
np.random.seed(100)
b1 = np.random.rand(1, 1)
b2 = np.random.rand(1, 4)
res = np.dot(b1, b2)
tgt = np.array([[0.15126730, 0.23068496, 0.45905553, 0.00256425]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_dotvecscalar2(self):
np.random.seed(100)
b1 = np.random.rand(4, 1)
b2 = np.random.rand(1, 1)
res = np.dot(b1, b2)
tgt = np.array([[0.00256425],[0.00131359],[0.00200324],[ 0.00398638]])
assert_almost_equal(res, tgt, decimal=self.N)
def test_all(self):
dims = [(), (1,), (1, 1)]
dout = [(), (1,), (1, 1), (1,), (), (1,), (1, 1), (1,), (1, 1)]
for dim, (dim1, dim2) in zip(dout, itertools.product(dims, dims)):
b1 = np.zeros(dim1)
b2 = np.zeros(dim2)
res = np.dot(b1, b2)
tgt = np.zeros(dim)
assert_(res.shape == tgt.shape)
assert_almost_equal(res, tgt, decimal=self.N)
def test_vecobject(self):
class Vec:
def __init__(self, sequence=None):
if sequence is None:
sequence = []
self.array = np.array(sequence)
def __add__(self, other):
out = Vec()
out.array = self.array + other.array
return out
def __sub__(self, other):
out = Vec()
out.array = self.array - other.array
return out
def __mul__(self, other): # with scalar
out = Vec(self.array.copy())
out.array *= other
return out
def __rmul__(self, other):
return self*other
U_non_cont = np.transpose([[1., 1.], [1., 2.]])
U_cont = np.ascontiguousarray(U_non_cont)
x = np.array([Vec([1., 0.]), Vec([0., 1.])])
zeros = np.array([Vec([0., 0.]), Vec([0., 0.])])
zeros_test = np.dot(U_cont, x) - np.dot(U_non_cont, x)
assert_equal(zeros[0].array, zeros_test[0].array)
assert_equal(zeros[1].array, zeros_test[1].array)
def test_dot_2args(self):
from numpy.core.multiarray import dot
a = np.array([[1, 2], [3, 4]], dtype=float)
b = np.array([[1, 0], [1, 1]], dtype=float)
c = np.array([[3, 2], [7, 4]], dtype=float)
d = dot(a, b)
assert_allclose(c, d)
def test_dot_3args(self):
from numpy.core.multiarray import dot
np.random.seed(22)
f = np.random.random_sample((1024, 16))
v = np.random.random_sample((16, 32))
r = np.empty((1024, 32))
for i in range(12):
dot(f, v, r)
if HAS_REFCOUNT:
assert_equal(sys.getrefcount(r), 2)
r2 = dot(f, v, out=None)
assert_array_equal(r2, r)
assert_(r is dot(f, v, out=r))
v = v[:, 0].copy() # v.shape == (16,)
r = r[:, 0].copy() # r.shape == (1024,)
r2 = dot(f, v)
assert_(r is dot(f, v, r))
assert_array_equal(r2, r)
def test_dot_3args_errors(self):
from numpy.core.multiarray import dot
np.random.seed(22)
f = np.random.random_sample((1024, 16))
v = np.random.random_sample((16, 32))
r = np.empty((1024, 31))
assert_raises(ValueError, dot, f, v, r)
r = np.empty((1024,))
assert_raises(ValueError, dot, f, v, r)
r = np.empty((32,))
assert_raises(ValueError, dot, f, v, r)
r = np.empty((32, 1024))
assert_raises(ValueError, dot, f, v, r)
assert_raises(ValueError, dot, f, v, r.T)
r = np.empty((1024, 64))
assert_raises(ValueError, dot, f, v, r[:, ::2])
assert_raises(ValueError, dot, f, v, r[:, :32])
r = np.empty((1024, 32), dtype=np.float32)
assert_raises(ValueError, dot, f, v, r)
r = np.empty((1024, 32), dtype=int)
assert_raises(ValueError, dot, f, v, r)
def test_dot_array_order(self):
a = np.array([[1, 2], [3, 4]], order='C')
b = np.array([[1, 2], [3, 4]], order='F')
res = np.dot(a, a)
# integer arrays are exact
assert_equal(np.dot(a, b), res)
assert_equal(np.dot(b, a), res)
assert_equal(np.dot(b, b), res)
def test_accelerate_framework_sgemv_fix(self):
def aligned_array(shape, align, dtype, order='C'):
d = dtype(0)
N = np.prod(shape)
tmp = np.zeros(N * d.nbytes + align, dtype=np.uint8)
address = tmp.__array_interface__["data"][0]
for offset in range(align):
if (address + offset) % align == 0:
break
tmp = tmp[offset:offset+N*d.nbytes].view(dtype=dtype)
return tmp.reshape(shape, order=order)
def as_aligned(arr, align, dtype, order='C'):
aligned = aligned_array(arr.shape, align, dtype, order)
aligned[:] = arr[:]
return aligned
def assert_dot_close(A, X, desired):
assert_allclose(np.dot(A, X), desired, rtol=1e-5, atol=1e-7)
m = aligned_array(100, 15, np.float32)
s = aligned_array((100, 100), 15, np.float32)
np.dot(s, m) # this will always segfault if the bug is present
testdata = itertools.product((15,32), (10000,), (200,89), ('C','F'))
for align, m, n, a_order in testdata:
# Calculation in double precision
A_d = np.random.rand(m, n)
X_d = np.random.rand(n)
desired = np.dot(A_d, X_d)
# Calculation with aligned single precision
A_f = as_aligned(A_d, align, np.float32, order=a_order)
X_f = as_aligned(X_d, align, np.float32)
assert_dot_close(A_f, X_f, desired)
# Strided A rows
A_d_2 = A_d[::2]
desired = np.dot(A_d_2, X_d)
A_f_2 = A_f[::2]
assert_dot_close(A_f_2, X_f, desired)
# Strided A columns, strided X vector
A_d_22 = A_d_2[:, ::2]
X_d_2 = X_d[::2]
desired = np.dot(A_d_22, X_d_2)
A_f_22 = A_f_2[:, ::2]
X_f_2 = X_f[::2]
assert_dot_close(A_f_22, X_f_2, desired)
# Check the strides are as expected
if a_order == 'F':
assert_equal(A_f_22.strides, (8, 8 * m))
else:
assert_equal(A_f_22.strides, (8 * n, 8))
assert_equal(X_f_2.strides, (8,))
# Strides in A rows + cols only
X_f_2c = as_aligned(X_f_2, align, np.float32)
assert_dot_close(A_f_22, X_f_2c, desired)
# Strides just in A cols
A_d_12 = A_d[:, ::2]
desired = np.dot(A_d_12, X_d_2)
A_f_12 = A_f[:, ::2]
assert_dot_close(A_f_12, X_f_2c, desired)
# Strides in A cols and X
assert_dot_close(A_f_12, X_f_2, desired)
class MatmulCommon:
"""Common tests for '@' operator and numpy.matmul.
"""
# Should work with these types. Will want to add
# "O" at some point
types = "?bhilqBHILQefdgFDGO"
def test_exceptions(self):
dims = [
((1,), (2,)), # mismatched vector vector
((2, 1,), (2,)), # mismatched matrix vector
((2,), (1, 2)), # mismatched vector matrix
((1, 2), (3, 1)), # mismatched matrix matrix
((1,), ()), # vector scalar
((), (1)), # scalar vector
((1, 1), ()), # matrix scalar
((), (1, 1)), # scalar matrix
((2, 2, 1), (3, 1, 2)), # cannot broadcast
]
for dt, (dm1, dm2) in itertools.product(self.types, dims):
a = np.ones(dm1, dtype=dt)
b = np.ones(dm2, dtype=dt)
assert_raises(ValueError, self.matmul, a, b)
def test_shapes(self):
dims = [
((1, 1), (2, 1, 1)), # broadcast first argument
((2, 1, 1), (1, 1)), # broadcast second argument
((2, 1, 1), (2, 1, 1)), # matrix stack sizes match
]
for dt, (dm1, dm2) in itertools.product(self.types, dims):
a = np.ones(dm1, dtype=dt)
b = np.ones(dm2, dtype=dt)
res = self.matmul(a, b)
assert_(res.shape == (2, 1, 1))
# vector vector returns scalars.
for dt in self.types:
a = np.ones((2,), dtype=dt)
b = np.ones((2,), dtype=dt)
c = self.matmul(a, b)
assert_(np.array(c).shape == ())
def test_result_types(self):
mat = np.ones((1,1))
vec = np.ones((1,))
for dt in self.types:
m = mat.astype(dt)
v = vec.astype(dt)
for arg in [(m, v), (v, m), (m, m)]:
res = self.matmul(*arg)
assert_(res.dtype == dt)
# vector vector returns scalars
if dt != "O":
res = self.matmul(v, v)
assert_(type(res) is np.dtype(dt).type)
def test_scalar_output(self):
vec1 = np.array([2])
vec2 = np.array([3, 4]).reshape(1, -1)
tgt = np.array([6, 8])
for dt in self.types[1:]:
v1 = vec1.astype(dt)
v2 = vec2.astype(dt)
res = self.matmul(v1, v2)
assert_equal(res, tgt)
res = self.matmul(v2.T, v1)
assert_equal(res, tgt)
# boolean type
vec = np.array([True, True], dtype='?').reshape(1, -1)
res = self.matmul(vec[:, 0], vec)
assert_equal(res, True)
def test_vector_vector_values(self):
vec1 = np.array([1, 2])
vec2 = np.array([3, 4]).reshape(-1, 1)
tgt1 = np.array([11])
tgt2 = np.array([[3, 6], [4, 8]])
for dt in self.types[1:]:
v1 = vec1.astype(dt)
v2 = vec2.astype(dt)
res = self.matmul(v1, v2)
assert_equal(res, tgt1)
# no broadcast, we must make v1 into a 2d ndarray
res = self.matmul(v2, v1.reshape(1, -1))
assert_equal(res, tgt2)
# boolean type
vec = np.array([True, True], dtype='?')
res = self.matmul(vec, vec)
assert_equal(res, True)
def test_vector_matrix_values(self):
vec = np.array([1, 2])
mat1 = np.array([[1, 2], [3, 4]])
mat2 = np.stack([mat1]*2, axis=0)
tgt1 = np.array([7, 10])
tgt2 = np.stack([tgt1]*2, axis=0)
for dt in self.types[1:]:
v = vec.astype(dt)
m1 = mat1.astype(dt)
m2 = mat2.astype(dt)
res = self.matmul(v, m1)
assert_equal(res, tgt1)
res = self.matmul(v, m2)
assert_equal(res, tgt2)
# boolean type
vec = np.array([True, False])
mat1 = np.array([[True, False], [False, True]])
mat2 = np.stack([mat1]*2, axis=0)
tgt1 = np.array([True, False])
tgt2 = np.stack([tgt1]*2, axis=0)
res = self.matmul(vec, mat1)
assert_equal(res, tgt1)
res = self.matmul(vec, mat2)
assert_equal(res, tgt2)
def test_matrix_vector_values(self):
vec = np.array([1, 2])
mat1 = np.array([[1, 2], [3, 4]])
mat2 = np.stack([mat1]*2, axis=0)
tgt1 = np.array([5, 11])
tgt2 = np.stack([tgt1]*2, axis=0)
for dt in self.types[1:]:
v = vec.astype(dt)
m1 = mat1.astype(dt)
m2 = mat2.astype(dt)
res = self.matmul(m1, v)
assert_equal(res, tgt1)
res = self.matmul(m2, v)
assert_equal(res, tgt2)
# boolean type
vec = np.array([True, False])
mat1 = np.array([[True, False], [False, True]])
mat2 = np.stack([mat1]*2, axis=0)
tgt1 = np.array([True, False])
tgt2 = np.stack([tgt1]*2, axis=0)
res = self.matmul(vec, mat1)
assert_equal(res, tgt1)
res = self.matmul(vec, mat2)
assert_equal(res, tgt2)
def test_matrix_matrix_values(self):
mat1 = np.array([[1, 2], [3, 4]])
mat2 = np.array([[1, 0], [1, 1]])
mat12 = np.stack([mat1, mat2], axis=0)
mat21 = np.stack([mat2, mat1], axis=0)
tgt11 = np.array([[7, 10], [15, 22]])
tgt12 = np.array([[3, 2], [7, 4]])
tgt21 = np.array([[1, 2], [4, 6]])
tgt12_21 = np.stack([tgt12, tgt21], axis=0)
tgt11_12 = np.stack((tgt11, tgt12), axis=0)
tgt11_21 = np.stack((tgt11, tgt21), axis=0)
for dt in self.types[1:]:
m1 = mat1.astype(dt)
m2 = mat2.astype(dt)
m12 = mat12.astype(dt)
m21 = mat21.astype(dt)
# matrix @ matrix
res = self.matmul(m1, m2)
assert_equal(res, tgt12)
res = self.matmul(m2, m1)
assert_equal(res, tgt21)
# stacked @ matrix
res = self.matmul(m12, m1)
assert_equal(res, tgt11_21)
# matrix @ stacked
res = self.matmul(m1, m12)
assert_equal(res, tgt11_12)
# stacked @ stacked
res = self.matmul(m12, m21)
assert_equal(res, tgt12_21)
# boolean type
m1 = np.array([[1, 1], [0, 0]], dtype=np.bool_)
m2 = np.array([[1, 0], [1, 1]], dtype=np.bool_)
m12 = np.stack([m1, m2], axis=0)
m21 = np.stack([m2, m1], axis=0)
tgt11 = m1
tgt12 = m1
tgt21 = np.array([[1, 1], [1, 1]], dtype=np.bool_)
tgt12_21 = np.stack([tgt12, tgt21], axis=0)
tgt11_12 = np.stack((tgt11, tgt12), axis=0)
tgt11_21 = np.stack((tgt11, tgt21), axis=0)
# matrix @ matrix
res = self.matmul(m1, m2)
assert_equal(res, tgt12)
res = self.matmul(m2, m1)
assert_equal(res, tgt21)
# stacked @ matrix
res = self.matmul(m12, m1)
assert_equal(res, tgt11_21)
# matrix @ stacked
res = self.matmul(m1, m12)
assert_equal(res, tgt11_12)
# stacked @ stacked
res = self.matmul(m12, m21)
assert_equal(res, tgt12_21)
class TestMatmul(MatmulCommon):
matmul = np.matmul
def test_out_arg(self):
a = np.ones((5, 2), dtype=float)
b = np.array([[1, 3], [5, 7]], dtype=float)
tgt = np.dot(a, b)
# test as positional argument
msg = "out positional argument"
out = np.zeros((5, 2), dtype=float)
self.matmul(a, b, out)
assert_array_equal(out, tgt, err_msg=msg)
# test as keyword argument
msg = "out keyword argument"
out = np.zeros((5, 2), dtype=float)
self.matmul(a, b, out=out)
assert_array_equal(out, tgt, err_msg=msg)
# test out with not allowed type cast (safe casting)
msg = "Cannot cast ufunc .* output"
out = np.zeros((5, 2), dtype=np.int32)
assert_raises_regex(TypeError, msg, self.matmul, a, b, out=out)
# test out with type upcast to complex
out = np.zeros((5, 2), dtype=np.complex128)
c = self.matmul(a, b, out=out)
assert_(c is out)
with suppress_warnings() as sup:
sup.filter(np.ComplexWarning, '')
c = c.astype(tgt.dtype)
assert_array_equal(c, tgt)
def test_out_contiguous(self):
a = np.ones((5, 2), dtype=float)
b = np.array([[1, 3], [5, 7]], dtype=float)
v = np.array([1, 3], dtype=float)
tgt = np.dot(a, b)
tgt_mv = np.dot(a, v)
# test out non-contiguous
out = np.ones((5, 2, 2), dtype=float)
c = self.matmul(a, b, out=out[..., 0])
assert c.base is out
assert_array_equal(c, tgt)
c = self.matmul(a, v, out=out[:, 0, 0])
assert_array_equal(c, tgt_mv)
c = self.matmul(v, a.T, out=out[:, 0, 0])
assert_array_equal(c, tgt_mv)
# test out contiguous in only last dim
out = np.ones((10, 2), dtype=float)
c = self.matmul(a, b, out=out[::2, :])
assert_array_equal(c, tgt)
# test transposes of out, args
out = np.ones((5, 2), dtype=float)
c = self.matmul(b.T, a.T, out=out.T)
assert_array_equal(out, tgt)
m1 = np.arange(15.).reshape(5, 3)
m2 = np.arange(21.).reshape(3, 7)
m3 = np.arange(30.).reshape(5, 6)[:, ::2] # non-contiguous
vc = np.arange(10.)
vr = np.arange(6.)
m0 = np.zeros((3, 0))
@pytest.mark.parametrize('args', (
# matrix-matrix
(m1, m2), (m2.T, m1.T), (m2.T.copy(), m1.T), (m2.T, m1.T.copy()),
# matrix-matrix-transpose, contiguous and non
(m1, m1.T), (m1.T, m1), (m1, m3.T), (m3, m1.T),
(m3, m3.T), (m3.T, m3),
# matrix-matrix non-contiguous
(m3, m2), (m2.T, m3.T), (m2.T.copy(), m3.T),
# vector-matrix, matrix-vector, contiguous
(m1, vr[:3]), (vc[:5], m1), (m1.T, vc[:5]), (vr[:3], m1.T),
# vector-matrix, matrix-vector, vector non-contiguous
(m1, vr[::2]), (vc[::2], m1), (m1.T, vc[::2]), (vr[::2], m1.T),
# vector-matrix, matrix-vector, matrix non-contiguous
(m3, vr[:3]), (vc[:5], m3), (m3.T, vc[:5]), (vr[:3], m3.T),
# vector-matrix, matrix-vector, both non-contiguous
(m3, vr[::2]), (vc[::2], m3), (m3.T, vc[::2]), (vr[::2], m3.T),
# size == 0
(m0, m0.T), (m0.T, m0), (m1, m0), (m0.T, m1.T),
))
def test_dot_equivalent(self, args):
r1 = np.matmul(*args)
r2 = np.dot(*args)
assert_equal(r1, r2)
r3 = np.matmul(args[0].copy(), args[1].copy())
assert_equal(r1, r3)
def test_matmul_object(self):
import fractions
f = np.vectorize(fractions.Fraction)
def random_ints():
return np.random.randint(1, 1000, size=(10, 3, 3))
M1 = f(random_ints(), random_ints())
M2 = f(random_ints(), random_ints())
M3 = self.matmul(M1, M2)
[N1, N2, N3] = [a.astype(float) for a in [M1, M2, M3]]
assert_allclose(N3, self.matmul(N1, N2))
def test_matmul_object_type_scalar(self):
from fractions import Fraction as F
v = np.array([F(2,3), F(5,7)])
res = self.matmul(v, v)
assert_(type(res) is F)
def test_matmul_empty(self):
a = np.empty((3, 0), dtype=object)
b = np.empty((0, 3), dtype=object)
c = np.zeros((3, 3))
assert_array_equal(np.matmul(a, b), c)
def test_matmul_exception_multiply(self):
# test that matmul fails if `__mul__` is missing
class add_not_multiply():
def __add__(self, other):
return self
a = np.full((3,3), add_not_multiply())
with assert_raises(TypeError):
b = np.matmul(a, a)
def test_matmul_exception_add(self):
# test that matmul fails if `__add__` is missing
class multiply_not_add():
def __mul__(self, other):
return self
a = np.full((3,3), multiply_not_add())
with assert_raises(TypeError):
b = np.matmul(a, a)
def test_matmul_bool(self):
# gh-14439
a = np.array([[1, 0],[1, 1]], dtype=bool)
assert np.max(a.view(np.uint8)) == 1
b = np.matmul(a, a)
# matmul with boolean output should always be 0, 1
assert np.max(b.view(np.uint8)) == 1
rg = np.random.default_rng(np.random.PCG64(43))
d = rg.integers(2, size=4*5, dtype=np.int8)
d = d.reshape(4, 5) > 0
out1 = np.matmul(d, d.reshape(5, 4))
out2 = np.dot(d, d.reshape(5, 4))
assert_equal(out1, out2)
c = np.matmul(np.zeros((2, 0), dtype=bool), np.zeros(0, dtype=bool))
assert not np.any(c)
class TestMatmulOperator(MatmulCommon):
import operator
matmul = operator.matmul
def test_array_priority_override(self):
class A:
__array_priority__ = 1000
def __matmul__(self, other):
return "A"
def __rmatmul__(self, other):
return "A"
a = A()
b = np.ones(2)
assert_equal(self.matmul(a, b), "A")
assert_equal(self.matmul(b, a), "A")
def test_matmul_raises(self):
assert_raises(TypeError, self.matmul, np.int8(5), np.int8(5))
assert_raises(TypeError, self.matmul, np.void(b'abc'), np.void(b'abc'))
assert_raises(ValueError, self.matmul, np.arange(10), np.void(b'abc'))
def test_matmul_inplace():
# It would be nice to support in-place matmul eventually, but for now
# we don't have a working implementation, so better just to error out
# and nudge people to writing "a = a @ b".
a = np.eye(3)
b = np.eye(3)
assert_raises(TypeError, a.__imatmul__, b)
import operator
assert_raises(TypeError, operator.imatmul, a, b)
assert_raises(TypeError, exec, "a @= b", globals(), locals())
def test_matmul_axes():
a = np.arange(3*4*5).reshape(3, 4, 5)
c = np.matmul(a, a, axes=[(-2, -1), (-1, -2), (1, 2)])
assert c.shape == (3, 4, 4)
d = np.matmul(a, a, axes=[(-2, -1), (-1, -2), (0, 1)])
assert d.shape == (4, 4, 3)
e = np.swapaxes(d, 0, 2)
assert_array_equal(e, c)
f = np.matmul(a, np.arange(3), axes=[(1, 0), (0), (0)])
assert f.shape == (4, 5)
class TestInner:
def test_inner_type_mismatch(self):
c = 1.
A = np.array((1,1), dtype='i,i')
assert_raises(TypeError, np.inner, c, A)
assert_raises(TypeError, np.inner, A, c)
def test_inner_scalar_and_vector(self):
for dt in np.typecodes['AllInteger'] + np.typecodes['AllFloat'] + '?':
sca = np.array(3, dtype=dt)[()]
vec = np.array([1, 2], dtype=dt)
desired = np.array([3, 6], dtype=dt)
assert_equal(np.inner(vec, sca), desired)
assert_equal(np.inner(sca, vec), desired)
def test_vecself(self):
# Ticket 844.
# Inner product of a vector with itself segfaults or give
# meaningless result
a = np.zeros(shape=(1, 80), dtype=np.float64)
p = np.inner(a, a)
assert_almost_equal(p, 0, decimal=14)
def test_inner_product_with_various_contiguities(self):
# github issue 6532
for dt in np.typecodes['AllInteger'] + np.typecodes['AllFloat'] + '?':
# check an inner product involving a matrix transpose
A = np.array([[1, 2], [3, 4]], dtype=dt)
B = np.array([[1, 3], [2, 4]], dtype=dt)
C = np.array([1, 1], dtype=dt)
desired = np.array([4, 6], dtype=dt)
assert_equal(np.inner(A.T, C), desired)
assert_equal(np.inner(C, A.T), desired)
assert_equal(np.inner(B, C), desired)
assert_equal(np.inner(C, B), desired)
# check a matrix product
desired = np.array([[7, 10], [15, 22]], dtype=dt)
assert_equal(np.inner(A, B), desired)
# check the syrk vs. gemm paths
desired = np.array([[5, 11], [11, 25]], dtype=dt)
assert_equal(np.inner(A, A), desired)
assert_equal(np.inner(A, A.copy()), desired)
# check an inner product involving an aliased and reversed view
a = np.arange(5).astype(dt)
b = a[::-1]
desired = np.array(10, dtype=dt).item()
assert_equal(np.inner(b, a), desired)
def test_3d_tensor(self):
for dt in np.typecodes['AllInteger'] + np.typecodes['AllFloat'] + '?':
a = np.arange(24).reshape(2,3,4).astype(dt)
b = np.arange(24, 48).reshape(2,3,4).astype(dt)
desired = np.array(
[[[[ 158, 182, 206],
[ 230, 254, 278]],
[[ 566, 654, 742],
[ 830, 918, 1006]],
[[ 974, 1126, 1278],
[1430, 1582, 1734]]],
[[[1382, 1598, 1814],
[2030, 2246, 2462]],
[[1790, 2070, 2350],
[2630, 2910, 3190]],
[[2198, 2542, 2886],
[3230, 3574, 3918]]]],
dtype=dt
)
assert_equal(np.inner(a, b), desired)
assert_equal(np.inner(b, a).transpose(2,3,0,1), desired)
class TestAlen:
def test_basic(self):
with pytest.warns(DeprecationWarning):
m = np.array([1, 2, 3])
assert_equal(np.alen(m), 3)
m = np.array([[1, 2, 3], [4, 5, 7]])
assert_equal(np.alen(m), 2)
m = [1, 2, 3]
assert_equal(np.alen(m), 3)
m = [[1, 2, 3], [4, 5, 7]]
assert_equal(np.alen(m), 2)
def test_singleton(self):
with pytest.warns(DeprecationWarning):
assert_equal(np.alen(5), 1)
class TestChoose:
def setup(self):
self.x = 2*np.ones((3,), dtype=int)
self.y = 3*np.ones((3,), dtype=int)
self.x2 = 2*np.ones((2, 3), dtype=int)
self.y2 = 3*np.ones((2, 3), dtype=int)
self.ind = [0, 0, 1]
def test_basic(self):
A = np.choose(self.ind, (self.x, self.y))
assert_equal(A, [2, 2, 3])
def test_broadcast1(self):
A = np.choose(self.ind, (self.x2, self.y2))
assert_equal(A, [[2, 2, 3], [2, 2, 3]])
def test_broadcast2(self):
A = np.choose(self.ind, (self.x, self.y2))
assert_equal(A, [[2, 2, 3], [2, 2, 3]])
@pytest.mark.parametrize("ops",
[(1000, np.array([1], dtype=np.uint8)),
(-1, np.array([1], dtype=np.uint8)),
(1., np.float32(3)),
(1., np.array([3], dtype=np.float32))],)
def test_output_dtype(self, ops):
expected_dt = np.result_type(*ops)
assert(np.choose([0], ops).dtype == expected_dt)
class TestRepeat:
def setup(self):
self.m = np.array([1, 2, 3, 4, 5, 6])
self.m_rect = self.m.reshape((2, 3))
def test_basic(self):
A = np.repeat(self.m, [1, 3, 2, 1, 1, 2])
assert_equal(A, [1, 2, 2, 2, 3,
3, 4, 5, 6, 6])
def test_broadcast1(self):
A = np.repeat(self.m, 2)
assert_equal(A, [1, 1, 2, 2, 3, 3,
4, 4, 5, 5, 6, 6])
def test_axis_spec(self):
A = np.repeat(self.m_rect, [2, 1], axis=0)
assert_equal(A, [[1, 2, 3],
[1, 2, 3],
[4, 5, 6]])
A = np.repeat(self.m_rect, [1, 3, 2], axis=1)
assert_equal(A, [[1, 2, 2, 2, 3, 3],
[4, 5, 5, 5, 6, 6]])
def test_broadcast2(self):
A = np.repeat(self.m_rect, 2, axis=0)
assert_equal(A, [[1, 2, 3],
[1, 2, 3],
[4, 5, 6],
[4, 5, 6]])
A = np.repeat(self.m_rect, 2, axis=1)
assert_equal(A, [[1, 1, 2, 2, 3, 3],
[4, 4, 5, 5, 6, 6]])
# TODO: test for multidimensional
NEIGH_MODE = {'zero': 0, 'one': 1, 'constant': 2, 'circular': 3, 'mirror': 4}
@pytest.mark.parametrize('dt', [float, Decimal], ids=['float', 'object'])
class TestNeighborhoodIter:
# Simple, 2d tests
def test_simple2d(self, dt):
# Test zero and one padding for simple data type
x = np.array([[0, 1], [2, 3]], dtype=dt)
r = [np.array([[0, 0, 0], [0, 0, 1]], dtype=dt),
np.array([[0, 0, 0], [0, 1, 0]], dtype=dt),
np.array([[0, 0, 1], [0, 2, 3]], dtype=dt),
np.array([[0, 1, 0], [2, 3, 0]], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 0, -1, 1], x[0], NEIGH_MODE['zero'])
assert_array_equal(l, r)
r = [np.array([[1, 1, 1], [1, 0, 1]], dtype=dt),
np.array([[1, 1, 1], [0, 1, 1]], dtype=dt),
np.array([[1, 0, 1], [1, 2, 3]], dtype=dt),
np.array([[0, 1, 1], [2, 3, 1]], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 0, -1, 1], x[0], NEIGH_MODE['one'])
assert_array_equal(l, r)
r = [np.array([[4, 4, 4], [4, 0, 1]], dtype=dt),
np.array([[4, 4, 4], [0, 1, 4]], dtype=dt),
np.array([[4, 0, 1], [4, 2, 3]], dtype=dt),
np.array([[0, 1, 4], [2, 3, 4]], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 0, -1, 1], 4, NEIGH_MODE['constant'])
assert_array_equal(l, r)
def test_mirror2d(self, dt):
x = np.array([[0, 1], [2, 3]], dtype=dt)
r = [np.array([[0, 0, 1], [0, 0, 1]], dtype=dt),
np.array([[0, 1, 1], [0, 1, 1]], dtype=dt),
np.array([[0, 0, 1], [2, 2, 3]], dtype=dt),
np.array([[0, 1, 1], [2, 3, 3]], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 0, -1, 1], x[0], NEIGH_MODE['mirror'])
assert_array_equal(l, r)
# Simple, 1d tests
def test_simple(self, dt):
# Test padding with constant values
x = np.linspace(1, 5, 5).astype(dt)
r = [[0, 1, 2], [1, 2, 3], [2, 3, 4], [3, 4, 5], [4, 5, 0]]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 1], x[0], NEIGH_MODE['zero'])
assert_array_equal(l, r)
r = [[1, 1, 2], [1, 2, 3], [2, 3, 4], [3, 4, 5], [4, 5, 1]]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 1], x[0], NEIGH_MODE['one'])
assert_array_equal(l, r)
r = [[x[4], 1, 2], [1, 2, 3], [2, 3, 4], [3, 4, 5], [4, 5, x[4]]]
l = _multiarray_tests.test_neighborhood_iterator(
x, [-1, 1], x[4], NEIGH_MODE['constant'])
assert_array_equal(l, r)
# Test mirror modes
def test_mirror(self, dt):
x = np.linspace(1, 5, 5).astype(dt)
r = np.array([[2, 1, 1, 2, 3], [1, 1, 2, 3, 4], [1, 2, 3, 4, 5],
[2, 3, 4, 5, 5], [3, 4, 5, 5, 4]], dtype=dt)
l = _multiarray_tests.test_neighborhood_iterator(
x, [-2, 2], x[1], NEIGH_MODE['mirror'])
assert_([i.dtype == dt for i in l])
assert_array_equal(l, r)
# Circular mode
def test_circular(self, dt):
x = np.linspace(1, 5, 5).astype(dt)
r = np.array([[4, 5, 1, 2, 3], [5, 1, 2, 3, 4], [1, 2, 3, 4, 5],
[2, 3, 4, 5, 1], [3, 4, 5, 1, 2]], dtype=dt)
l = _multiarray_tests.test_neighborhood_iterator(
x, [-2, 2], x[0], NEIGH_MODE['circular'])
assert_array_equal(l, r)
# Test stacking neighborhood iterators
class TestStackedNeighborhoodIter:
# Simple, 1d test: stacking 2 constant-padded neigh iterators
def test_simple_const(self):
dt = np.float64
# Test zero and one padding for simple data type
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([0], dtype=dt),
np.array([0], dtype=dt),
np.array([1], dtype=dt),
np.array([2], dtype=dt),
np.array([3], dtype=dt),
np.array([0], dtype=dt),
np.array([0], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-2, 4], NEIGH_MODE['zero'], [0, 0], NEIGH_MODE['zero'])
assert_array_equal(l, r)
r = [np.array([1, 0, 1], dtype=dt),
np.array([0, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 0], dtype=dt),
np.array([3, 0, 1], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [-1, 1], NEIGH_MODE['one'])
assert_array_equal(l, r)
# 2nd simple, 1d test: stacking 2 neigh iterators, mixing const padding and
# mirror padding
def test_simple_mirror(self):
dt = np.float64
# Stacking zero on top of mirror
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([0, 1, 1], dtype=dt),
np.array([1, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 3], dtype=dt),
np.array([3, 3, 0], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['mirror'], [-1, 1], NEIGH_MODE['zero'])
assert_array_equal(l, r)
# Stacking mirror on top of zero
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([1, 0, 0], dtype=dt),
np.array([0, 0, 1], dtype=dt),
np.array([0, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 0], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [-2, 0], NEIGH_MODE['mirror'])
assert_array_equal(l, r)
# Stacking mirror on top of zero: 2nd
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([0, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 0], dtype=dt),
np.array([3, 0, 0], dtype=dt),
np.array([0, 0, 3], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [0, 2], NEIGH_MODE['mirror'])
assert_array_equal(l, r)
# Stacking mirror on top of zero: 3rd
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([1, 0, 0, 1, 2], dtype=dt),
np.array([0, 0, 1, 2, 3], dtype=dt),
np.array([0, 1, 2, 3, 0], dtype=dt),
np.array([1, 2, 3, 0, 0], dtype=dt),
np.array([2, 3, 0, 0, 3], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [-2, 2], NEIGH_MODE['mirror'])
assert_array_equal(l, r)
# 3rd simple, 1d test: stacking 2 neigh iterators, mixing const padding and
# circular padding
def test_simple_circular(self):
dt = np.float64
# Stacking zero on top of mirror
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([0, 3, 1], dtype=dt),
np.array([3, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 1], dtype=dt),
np.array([3, 1, 0], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['circular'], [-1, 1], NEIGH_MODE['zero'])
assert_array_equal(l, r)
# Stacking mirror on top of zero
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([3, 0, 0], dtype=dt),
np.array([0, 0, 1], dtype=dt),
np.array([0, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 0], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [-2, 0], NEIGH_MODE['circular'])
assert_array_equal(l, r)
# Stacking mirror on top of zero: 2nd
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([0, 1, 2], dtype=dt),
np.array([1, 2, 3], dtype=dt),
np.array([2, 3, 0], dtype=dt),
np.array([3, 0, 0], dtype=dt),
np.array([0, 0, 1], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [0, 2], NEIGH_MODE['circular'])
assert_array_equal(l, r)
# Stacking mirror on top of zero: 3rd
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([3, 0, 0, 1, 2], dtype=dt),
np.array([0, 0, 1, 2, 3], dtype=dt),
np.array([0, 1, 2, 3, 0], dtype=dt),
np.array([1, 2, 3, 0, 0], dtype=dt),
np.array([2, 3, 0, 0, 1], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [-1, 3], NEIGH_MODE['zero'], [-2, 2], NEIGH_MODE['circular'])
assert_array_equal(l, r)
# 4th simple, 1d test: stacking 2 neigh iterators, but with lower iterator
# being strictly within the array
def test_simple_strict_within(self):
dt = np.float64
# Stacking zero on top of zero, first neighborhood strictly inside the
# array
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([1, 2, 3, 0], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [1, 1], NEIGH_MODE['zero'], [-1, 2], NEIGH_MODE['zero'])
assert_array_equal(l, r)
# Stacking mirror on top of zero, first neighborhood strictly inside the
# array
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([1, 2, 3, 3], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [1, 1], NEIGH_MODE['zero'], [-1, 2], NEIGH_MODE['mirror'])
assert_array_equal(l, r)
# Stacking mirror on top of zero, first neighborhood strictly inside the
# array
x = np.array([1, 2, 3], dtype=dt)
r = [np.array([1, 2, 3, 1], dtype=dt)]
l = _multiarray_tests.test_neighborhood_iterator_oob(
x, [1, 1], NEIGH_MODE['zero'], [-1, 2], NEIGH_MODE['circular'])
assert_array_equal(l, r)
class TestWarnings:
def test_complex_warning(self):
x = np.array([1, 2])
y = np.array([1-2j, 1+2j])
with warnings.catch_warnings():
warnings.simplefilter("error", np.ComplexWarning)
assert_raises(np.ComplexWarning, x.__setitem__, slice(None), y)
assert_equal(x, [1, 2])
class TestMinScalarType:
def test_usigned_shortshort(self):
dt = np.min_scalar_type(2**8-1)
wanted = np.dtype('uint8')
assert_equal(wanted, dt)
def test_usigned_short(self):
dt = np.min_scalar_type(2**16-1)
wanted = np.dtype('uint16')
assert_equal(wanted, dt)
def test_usigned_int(self):
dt = np.min_scalar_type(2**32-1)
wanted = np.dtype('uint32')
assert_equal(wanted, dt)
def test_usigned_longlong(self):
dt = np.min_scalar_type(2**63-1)
wanted = np.dtype('uint64')
assert_equal(wanted, dt)
def test_object(self):
dt = np.min_scalar_type(2**64)
wanted = np.dtype('O')
assert_equal(wanted, dt)
from numpy.core._internal import _dtype_from_pep3118
class TestPEP3118Dtype:
def _check(self, spec, wanted):
dt = np.dtype(wanted)
actual = _dtype_from_pep3118(spec)
assert_equal(actual, dt,
err_msg="spec %r != dtype %r" % (spec, wanted))
def test_native_padding(self):
align = np.dtype('i').alignment
for j in range(8):
if j == 0:
s = 'bi'
else:
s = 'b%dxi' % j
self._check('@'+s, {'f0': ('i1', 0),
'f1': ('i', align*(1 + j//align))})
self._check('='+s, {'f0': ('i1', 0),
'f1': ('i', 1+j)})
def test_native_padding_2(self):
# Native padding should work also for structs and sub-arrays
self._check('x3T{xi}', {'f0': (({'f0': ('i', 4)}, (3,)), 4)})
self._check('^x3T{xi}', {'f0': (({'f0': ('i', 1)}, (3,)), 1)})
def test_trailing_padding(self):
# Trailing padding should be included, *and*, the item size
# should match the alignment if in aligned mode
align = np.dtype('i').alignment
size = np.dtype('i').itemsize
def aligned(n):
return align*(1 + (n-1)//align)
base = dict(formats=['i'], names=['f0'])
self._check('ix', dict(itemsize=aligned(size + 1), **base))
self._check('ixx', dict(itemsize=aligned(size + 2), **base))
self._check('ixxx', dict(itemsize=aligned(size + 3), **base))
self._check('ixxxx', dict(itemsize=aligned(size + 4), **base))
self._check('i7x', dict(itemsize=aligned(size + 7), **base))
self._check('^ix', dict(itemsize=size + 1, **base))
self._check('^ixx', dict(itemsize=size + 2, **base))
self._check('^ixxx', dict(itemsize=size + 3, **base))
self._check('^ixxxx', dict(itemsize=size + 4, **base))
self._check('^i7x', dict(itemsize=size + 7, **base))
def test_native_padding_3(self):
dt = np.dtype(
[('a', 'b'), ('b', 'i'),
('sub', np.dtype('b,i')), ('c', 'i')],
align=True)
self._check("T{b:a:xxxi:b:T{b:f0:=i:f1:}:sub:xxxi:c:}", dt)
dt = np.dtype(
[('a', 'b'), ('b', 'i'), ('c', 'b'), ('d', 'b'),
('e', 'b'), ('sub', np.dtype('b,i', align=True))])
self._check("T{b:a:=i:b:b:c:b:d:b:e:T{b:f0:xxxi:f1:}:sub:}", dt)
def test_padding_with_array_inside_struct(self):
dt = np.dtype(
[('a', 'b'), ('b', 'i'), ('c', 'b', (3,)),
('d', 'i')],
align=True)
self._check("T{b:a:xxxi:b:3b:c:xi:d:}", dt)
def test_byteorder_inside_struct(self):
# The byte order after @T{=i} should be '=', not '@'.
# Check this by noting the absence of native alignment.
self._check('@T{^i}xi', {'f0': ({'f0': ('i', 0)}, 0),
'f1': ('i', 5)})
def test_intra_padding(self):
# Natively aligned sub-arrays may require some internal padding
align = np.dtype('i').alignment
size = np.dtype('i').itemsize
def aligned(n):
return (align*(1 + (n-1)//align))
self._check('(3)T{ix}', (dict(
names=['f0'],
formats=['i'],
offsets=[0],
itemsize=aligned(size + 1)
), (3,)))
def test_char_vs_string(self):
dt = np.dtype('c')
self._check('c', dt)
dt = np.dtype([('f0', 'S1', (4,)), ('f1', 'S4')])
self._check('4c4s', dt)
def test_field_order(self):
# gh-9053 - previously, we relied on dictionary key order
self._check("(0)I:a:f:b:", [('a', 'I', (0,)), ('b', 'f')])
self._check("(0)I:b:f:a:", [('b', 'I', (0,)), ('a', 'f')])
def test_unnamed_fields(self):
self._check('ii', [('f0', 'i'), ('f1', 'i')])
self._check('ii:f0:', [('f1', 'i'), ('f0', 'i')])
self._check('i', 'i')
self._check('i:f0:', [('f0', 'i')])
class TestNewBufferProtocol:
""" Test PEP3118 buffers """
def _check_roundtrip(self, obj):
obj = np.asarray(obj)
x = memoryview(obj)
y = np.asarray(x)
y2 = np.array(x)
assert_(not y.flags.owndata)
assert_(y2.flags.owndata)
assert_equal(y.dtype, obj.dtype)
assert_equal(y.shape, obj.shape)
assert_array_equal(obj, y)
assert_equal(y2.dtype, obj.dtype)
assert_equal(y2.shape, obj.shape)
assert_array_equal(obj, y2)
def test_roundtrip(self):
x = np.array([1, 2, 3, 4, 5], dtype='i4')
self._check_roundtrip(x)
x = np.array([[1, 2], [3, 4]], dtype=np.float64)
self._check_roundtrip(x)
x = np.zeros((3, 3, 3), dtype=np.float32)[:, 0,:]
self._check_roundtrip(x)
dt = [('a', 'b'),
('b', 'h'),
('c', 'i'),
('d', 'l'),
('dx', 'q'),
('e', 'B'),
('f', 'H'),
('g', 'I'),
('h', 'L'),
('hx', 'Q'),
('i', np.single),
('j', np.double),
('k', np.longdouble),
('ix', np.csingle),
('jx', np.cdouble),
('kx', np.clongdouble),
('l', 'S4'),
('m', 'U4'),
('n', 'V3'),
('o', '?'),
('p', np.half),
]
x = np.array(
[(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
b'aaaa', 'bbbb', b'xxx', True, 1.0)],
dtype=dt)
self._check_roundtrip(x)
x = np.array(([[1, 2], [3, 4]],), dtype=[('a', (int, (2, 2)))])
self._check_roundtrip(x)
x = np.array([1, 2, 3], dtype='>i2')
self._check_roundtrip(x)
x = np.array([1, 2, 3], dtype='<i2')
self._check_roundtrip(x)
x = np.array([1, 2, 3], dtype='>i4')
self._check_roundtrip(x)
x = np.array([1, 2, 3], dtype='<i4')
self._check_roundtrip(x)
# check long long can be represented as non-native
x = np.array([1, 2, 3], dtype='>q')
self._check_roundtrip(x)
# Native-only data types can be passed through the buffer interface
# only in native byte order
if sys.byteorder == 'little':
x = np.array([1, 2, 3], dtype='>g')
assert_raises(ValueError, self._check_roundtrip, x)
x = np.array([1, 2, 3], dtype='<g')
self._check_roundtrip(x)
else:
x = np.array([1, 2, 3], dtype='>g')
self._check_roundtrip(x)
x = np.array([1, 2, 3], dtype='<g')
assert_raises(ValueError, self._check_roundtrip, x)
def test_roundtrip_half(self):
half_list = [
1.0,
-2.0,
6.5504 * 10**4, # (max half precision)
2**-14, # ~= 6.10352 * 10**-5 (minimum positive normal)
2**-24, # ~= 5.96046 * 10**-8 (minimum strictly positive subnormal)
0.0,
-0.0,
float('+inf'),
float('-inf'),
0.333251953125, # ~= 1/3
]
x = np.array(half_list, dtype='>e')
self._check_roundtrip(x)
x = np.array(half_list, dtype='<e')
self._check_roundtrip(x)
def test_roundtrip_single_types(self):
for typ in np.typeDict.values():
dtype = np.dtype(typ)
if dtype.char in 'Mm':
# datetimes cannot be used in buffers
continue
if dtype.char == 'V':
# skip void
continue
x = np.zeros(4, dtype=dtype)
self._check_roundtrip(x)
if dtype.char not in 'qQgG':
dt = dtype.newbyteorder('<')
x = np.zeros(4, dtype=dt)
self._check_roundtrip(x)
dt = dtype.newbyteorder('>')
x = np.zeros(4, dtype=dt)
self._check_roundtrip(x)
def test_roundtrip_scalar(self):
# Issue #4015.
self._check_roundtrip(0)
def test_invalid_buffer_format(self):
# datetime64 cannot be used fully in a buffer yet
# Should be fixed in the next Numpy major release
dt = np.dtype([('a', 'uint16'), ('b', 'M8[s]')])
a = np.empty(3, dt)
assert_raises((ValueError, BufferError), memoryview, a)
assert_raises((ValueError, BufferError), memoryview, np.array((3), 'M8[D]'))
def test_export_simple_1d(self):
x = np.array([1, 2, 3, 4, 5], dtype='i')
y = memoryview(x)
assert_equal(y.format, 'i')
assert_equal(y.shape, (5,))
assert_equal(y.ndim, 1)
assert_equal(y.strides, (4,))
assert_equal(y.suboffsets, ())
assert_equal(y.itemsize, 4)
def test_export_simple_nd(self):
x = np.array([[1, 2], [3, 4]], dtype=np.float64)
y = memoryview(x)
assert_equal(y.format, 'd')
assert_equal(y.shape, (2, 2))
assert_equal(y.ndim, 2)
assert_equal(y.strides, (16, 8))
assert_equal(y.suboffsets, ())
assert_equal(y.itemsize, 8)
def test_export_discontiguous(self):
x = np.zeros((3, 3, 3), dtype=np.float32)[:, 0,:]
y = memoryview(x)
assert_equal(y.format, 'f')
assert_equal(y.shape, (3, 3))
assert_equal(y.ndim, 2)
assert_equal(y.strides, (36, 4))
assert_equal(y.suboffsets, ())
assert_equal(y.itemsize, 4)
def test_export_record(self):
dt = [('a', 'b'),
('b', 'h'),
('c', 'i'),
('d', 'l'),
('dx', 'q'),
('e', 'B'),
('f', 'H'),
('g', 'I'),
('h', 'L'),
('hx', 'Q'),
('i', np.single),
('j', np.double),
('k', np.longdouble),
('ix', np.csingle),
('jx', np.cdouble),
('kx', np.clongdouble),
('l', 'S4'),
('m', 'U4'),
('n', 'V3'),
('o', '?'),
('p', np.half),
]
x = np.array(
[(1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
b'aaaa', 'bbbb', b' ', True, 1.0)],
dtype=dt)
y = memoryview(x)
assert_equal(y.shape, (1,))
assert_equal(y.ndim, 1)
assert_equal(y.suboffsets, ())
sz = sum([np.dtype(b).itemsize for a, b in dt])
if np.dtype('l').itemsize == 4:
assert_equal(y.format, 'T{b:a:=h:b:i:c:l:d:q:dx:B:e:@H:f:=I:g:L:h:Q:hx:f:i:d:j:^g:k:=Zf:ix:Zd:jx:^Zg:kx:4s:l:=4w:m:3x:n:?:o:@e:p:}')
else:
assert_equal(y.format, 'T{b:a:=h:b:i:c:q:d:q:dx:B:e:@H:f:=I:g:Q:h:Q:hx:f:i:d:j:^g:k:=Zf:ix:Zd:jx:^Zg:kx:4s:l:=4w:m:3x:n:?:o:@e:p:}')
# Cannot test if NPY_RELAXED_STRIDES_CHECKING changes the strides
if not (np.ones(1).strides[0] == np.iinfo(np.intp).max):
assert_equal(y.strides, (sz,))
assert_equal(y.itemsize, sz)
def test_export_subarray(self):
x = np.array(([[1, 2], [3, 4]],), dtype=[('a', ('i', (2, 2)))])
y = memoryview(x)
assert_equal(y.format, 'T{(2,2)i:a:}')
assert_equal(y.shape, ())
assert_equal(y.ndim, 0)
assert_equal(y.strides, ())
assert_equal(y.suboffsets, ())
assert_equal(y.itemsize, 16)
def test_export_endian(self):
x = np.array([1, 2, 3], dtype='>i')
y = memoryview(x)
if sys.byteorder == 'little':
assert_equal(y.format, '>i')
else:
assert_equal(y.format, 'i')
x = np.array([1, 2, 3], dtype='<i')
y = memoryview(x)
if sys.byteorder == 'little':
assert_equal(y.format, 'i')
else:
assert_equal(y.format, '<i')
def test_export_flags(self):
# Check SIMPLE flag, see also gh-3613 (exception should be BufferError)
assert_raises(ValueError,
_multiarray_tests.get_buffer_info,
np.arange(5)[::2], ('SIMPLE',))
def test_padding(self):
for j in range(8):
x = np.array([(1,), (2,)], dtype={'f0': (int, j)})
self._check_roundtrip(x)
def test_reference_leak(self):
if HAS_REFCOUNT:
count_1 = sys.getrefcount(np.core._internal)
a = np.zeros(4)
b = memoryview(a)
c = np.asarray(b)
if HAS_REFCOUNT:
count_2 = sys.getrefcount(np.core._internal)
assert_equal(count_1, count_2)
del c # avoid pyflakes unused variable warning.
def test_padded_struct_array(self):
dt1 = np.dtype(
[('a', 'b'), ('b', 'i'), ('sub', np.dtype('b,i')), ('c', 'i')],
align=True)
x1 = np.arange(dt1.itemsize, dtype=np.int8).view(dt1)
self._check_roundtrip(x1)
dt2 = np.dtype(
[('a', 'b'), ('b', 'i'), ('c', 'b', (3,)), ('d', 'i')],
align=True)
x2 = np.arange(dt2.itemsize, dtype=np.int8).view(dt2)
self._check_roundtrip(x2)
dt3 = np.dtype(
[('a', 'b'), ('b', 'i'), ('c', 'b'), ('d', 'b'),
('e', 'b'), ('sub', np.dtype('b,i', align=True))])
x3 = np.arange(dt3.itemsize, dtype=np.int8).view(dt3)
self._check_roundtrip(x3)
@pytest.mark.valgrind_error(reason="leaks buffer info cache temporarily.")
def test_relaxed_strides(self, c=np.ones((1, 10, 10), dtype='i8')):
# Note: c defined as parameter so that it is persistent and leak
# checks will notice gh-16934 (buffer info cache leak).
# Check for NPY_RELAXED_STRIDES_CHECKING:
if np.ones((10, 1), order="C").flags.f_contiguous:
c.strides = (-1, 80, 8)
assert_(memoryview(c).strides == (800, 80, 8))
# Writing C-contiguous data to a BytesIO buffer should work
fd = io.BytesIO()
fd.write(c.data)
fortran = c.T
assert_(memoryview(fortran).strides == (8, 80, 800))
arr = np.ones((1, 10))
if arr.flags.f_contiguous:
shape, strides = _multiarray_tests.get_buffer_info(
arr, ['F_CONTIGUOUS'])
assert_(strides[0] == 8)
arr = np.ones((10, 1), order='F')
shape, strides = _multiarray_tests.get_buffer_info(
arr, ['C_CONTIGUOUS'])
assert_(strides[-1] == 8)
@pytest.mark.valgrind_error(reason="leaks buffer info cache temporarily.")
@pytest.mark.skipif(not np.ones((10, 1), order="C").flags.f_contiguous,
reason="Test is unnecessary (but fails) without relaxed strides.")
def test_relaxed_strides_buffer_info_leak(self, arr=np.ones((1, 10))):
"""Test that alternating export of C- and F-order buffers from
an array which is both C- and F-order when relaxed strides is
active works.
This test defines array in the signature to ensure leaking more
references every time the test is run (catching the leak with
pytest-leaks).
"""
for i in range(10):
_, s = _multiarray_tests.get_buffer_info(arr, ['F_CONTIGUOUS'])
assert s == (8, 8)
_, s = _multiarray_tests.get_buffer_info(arr, ['C_CONTIGUOUS'])
assert s == (80, 8)
def test_out_of_order_fields(self):
dt = np.dtype(dict(
formats=['<i4', '<i4'],
names=['one', 'two'],
offsets=[4, 0],
itemsize=8
))
# overlapping fields cannot be represented by PEP3118
arr = np.empty(1, dt)
with assert_raises(ValueError):
memoryview(arr)
def test_max_dims(self):
a = np.empty((1,) * 32)
self._check_roundtrip(a)
@pytest.mark.slow
def test_error_too_many_dims(self):
def make_ctype(shape, scalar_type):
t = scalar_type
for dim in shape[::-1]:
t = dim * t
return t
# construct a memoryview with 33 dimensions
c_u8_33d = make_ctype((1,)*33, ctypes.c_uint8)
m = memoryview(c_u8_33d())
assert_equal(m.ndim, 33)
assert_raises_regex(
RuntimeError, "ndim",
np.array, m)
# The above seems to create some deep cycles, clean them up for
# easier reference count debugging:
del c_u8_33d, m
for i in range(33):
if gc.collect() == 0:
break
def test_error_pointer_type(self):
# gh-6741
m = memoryview(ctypes.pointer(ctypes.c_uint8()))
assert_('&' in m.format)
assert_raises_regex(
ValueError, "format string",
np.array, m)
def test_error_message_unsupported(self):
# wchar has no corresponding numpy type - if this changes in future, we
# need a better way to construct an invalid memoryview format.
t = ctypes.c_wchar * 4
with assert_raises(ValueError) as cm:
np.array(t())
exc = cm.exception
with assert_raises_regex(
NotImplementedError,
r"Unrepresentable .* 'u' \(UCS-2 strings\)"
):
raise exc.__cause__
def test_ctypes_integer_via_memoryview(self):
# gh-11150, due to bpo-10746
for c_integer in {ctypes.c_int, ctypes.c_long, ctypes.c_longlong}:
value = c_integer(42)
with warnings.catch_warnings(record=True):
warnings.filterwarnings('always', r'.*\bctypes\b', RuntimeWarning)
np.asarray(value)
def test_ctypes_struct_via_memoryview(self):
# gh-10528
class foo(ctypes.Structure):
_fields_ = [('a', ctypes.c_uint8), ('b', ctypes.c_uint32)]
f = foo(a=1, b=2)
with warnings.catch_warnings(record=True):
warnings.filterwarnings('always', r'.*\bctypes\b', RuntimeWarning)
arr = np.asarray(f)
assert_equal(arr['a'], 1)
assert_equal(arr['b'], 2)
f.a = 3
assert_equal(arr['a'], 3)
class TestArrayAttributeDeletion:
def test_multiarray_writable_attributes_deletion(self):
# ticket #2046, should not seqfault, raise AttributeError
a = np.ones(2)
attr = ['shape', 'strides', 'data', 'dtype', 'real', 'imag', 'flat']
with suppress_warnings() as sup:
sup.filter(DeprecationWarning, "Assigning the 'data' attribute")
for s in attr:
assert_raises(AttributeError, delattr, a, s)
def test_multiarray_not_writable_attributes_deletion(self):
a = np.ones(2)
attr = ["ndim", "flags", "itemsize", "size", "nbytes", "base",
"ctypes", "T", "__array_interface__", "__array_struct__",
"__array_priority__", "__array_finalize__"]
for s in attr:
assert_raises(AttributeError, delattr, a, s)
def test_multiarray_flags_writable_attribute_deletion(self):
a = np.ones(2).flags
attr = ['writebackifcopy', 'updateifcopy', 'aligned', 'writeable']
for s in attr:
assert_raises(AttributeError, delattr, a, s)
def test_multiarray_flags_not_writable_attribute_deletion(self):
a = np.ones(2).flags
attr = ["contiguous", "c_contiguous", "f_contiguous", "fortran",
"owndata", "fnc", "forc", "behaved", "carray", "farray",
"num"]
for s in attr:
assert_raises(AttributeError, delattr, a, s)
class TestArrayInterface():
class Foo:
def __init__(self, value):
self.value = value
self.iface = {'typestr': 'f8'}
def __float__(self):
return float(self.value)
@property
def __array_interface__(self):
return self.iface
f = Foo(0.5)
@pytest.mark.parametrize('val, iface, expected', [
(f, {}, 0.5),
([f], {}, [0.5]),
([f, f], {}, [0.5, 0.5]),
(f, {'shape': ()}, 0.5),
(f, {'shape': None}, TypeError),
(f, {'shape': (1, 1)}, [[0.5]]),
(f, {'shape': (2,)}, ValueError),
(f, {'strides': ()}, 0.5),
(f, {'strides': (2,)}, ValueError),
(f, {'strides': 16}, TypeError),
])
def test_scalar_interface(self, val, iface, expected):
# Test scalar coercion within the array interface
self.f.iface = {'typestr': 'f8'}
self.f.iface.update(iface)
if HAS_REFCOUNT:
pre_cnt = sys.getrefcount(np.dtype('f8'))
if isinstance(expected, type):
assert_raises(expected, np.array, val)
else:
result = np.array(val)
assert_equal(np.array(val), expected)
assert result.dtype == 'f8'
del result
if HAS_REFCOUNT:
post_cnt = sys.getrefcount(np.dtype('f8'))
assert_equal(pre_cnt, post_cnt)
def test_interface_no_shape():
class ArrayLike:
array = np.array(1)
__array_interface__ = array.__array_interface__
assert_equal(np.array(ArrayLike()), 1)
def test_array_interface_itemsize():
# See gh-6361
my_dtype = np.dtype({'names': ['A', 'B'], 'formats': ['f4', 'f4'],
'offsets': [0, 8], 'itemsize': 16})
a = np.ones(10, dtype=my_dtype)
descr_t = np.dtype(a.__array_interface__['descr'])
typestr_t = np.dtype(a.__array_interface__['typestr'])
assert_equal(descr_t.itemsize, typestr_t.itemsize)
def test_array_interface_empty_shape():
# See gh-7994
arr = np.array([1, 2, 3])
interface1 = dict(arr.__array_interface__)
interface1['shape'] = ()
class DummyArray1:
__array_interface__ = interface1
# NOTE: Because Py2 str/Py3 bytes supports the buffer interface, setting
# the interface data to bytes would invoke the bug this tests for, that
# __array_interface__ with shape=() is not allowed if the data is an object
# exposing the buffer interface
interface2 = dict(interface1)
interface2['data'] = arr[0].tobytes()
class DummyArray2:
__array_interface__ = interface2
arr1 = np.asarray(DummyArray1())
arr2 = np.asarray(DummyArray2())
arr3 = arr[:1].reshape(())
assert_equal(arr1, arr2)
assert_equal(arr1, arr3)
def test_array_interface_offset():
arr = np.array([1, 2, 3], dtype='int32')
interface = dict(arr.__array_interface__)
interface['data'] = memoryview(arr)
interface['shape'] = (2,)
interface['offset'] = 4
class DummyArray:
__array_interface__ = interface
arr1 = np.asarray(DummyArray())
assert_equal(arr1, arr[1:])
def test_flat_element_deletion():
it = np.ones(3).flat
try:
del it[1]
del it[1:2]
except TypeError:
pass
except Exception:
raise AssertionError
def test_scalar_element_deletion():
a = np.zeros(2, dtype=[('x', 'int'), ('y', 'int')])
assert_raises(ValueError, a[0].__delitem__, 'x')
class TestMemEventHook:
def test_mem_seteventhook(self):
# The actual tests are within the C code in
# multiarray/_multiarray_tests.c.src
_multiarray_tests.test_pydatamem_seteventhook_start()
# force an allocation and free of a numpy array
# needs to be larger then limit of small memory cacher in ctors.c
a = np.zeros(1000)
del a
break_cycles()
_multiarray_tests.test_pydatamem_seteventhook_end()
class TestMapIter:
def test_mapiter(self):
# The actual tests are within the C code in
# multiarray/_multiarray_tests.c.src
a = np.arange(12).reshape((3, 4)).astype(float)
index = ([1, 1, 2, 0],
[0, 0, 2, 3])
vals = [50, 50, 30, 16]
_multiarray_tests.test_inplace_increment(a, index, vals)
assert_equal(a, [[0.00, 1., 2.0, 19.],
[104., 5., 6.0, 7.0],
[8.00, 9., 40., 11.]])
b = np.arange(6).astype(float)
index = (np.array([1, 2, 0]),)
vals = [50, 4, 100.1]
_multiarray_tests.test_inplace_increment(b, index, vals)
assert_equal(b, [100.1, 51., 6., 3., 4., 5.])
class TestAsCArray:
def test_1darray(self):
array = np.arange(24, dtype=np.double)
from_c = _multiarray_tests.test_as_c_array(array, 3)
assert_equal(array[3], from_c)
def test_2darray(self):
array = np.arange(24, dtype=np.double).reshape(3, 8)
from_c = _multiarray_tests.test_as_c_array(array, 2, 4)
assert_equal(array[2, 4], from_c)
def test_3darray(self):
array = np.arange(24, dtype=np.double).reshape(2, 3, 4)
from_c = _multiarray_tests.test_as_c_array(array, 1, 2, 3)
assert_equal(array[1, 2, 3], from_c)
class TestConversion:
def test_array_scalar_relational_operation(self):
# All integer
for dt1 in np.typecodes['AllInteger']:
assert_(1 > np.array(0, dtype=dt1), "type %s failed" % (dt1,))
assert_(not 1 < np.array(0, dtype=dt1), "type %s failed" % (dt1,))
for dt2 in np.typecodes['AllInteger']:
assert_(np.array(1, dtype=dt1) > np.array(0, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
assert_(not np.array(1, dtype=dt1) < np.array(0, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
# Unsigned integers
for dt1 in 'BHILQP':
assert_(-1 < np.array(1, dtype=dt1), "type %s failed" % (dt1,))
assert_(not -1 > np.array(1, dtype=dt1), "type %s failed" % (dt1,))
assert_(-1 != np.array(1, dtype=dt1), "type %s failed" % (dt1,))
# Unsigned vs signed
for dt2 in 'bhilqp':
assert_(np.array(1, dtype=dt1) > np.array(-1, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
assert_(not np.array(1, dtype=dt1) < np.array(-1, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
assert_(np.array(1, dtype=dt1) != np.array(-1, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
# Signed integers and floats
for dt1 in 'bhlqp' + np.typecodes['Float']:
assert_(1 > np.array(-1, dtype=dt1), "type %s failed" % (dt1,))
assert_(not 1 < np.array(-1, dtype=dt1), "type %s failed" % (dt1,))
assert_(-1 == np.array(-1, dtype=dt1), "type %s failed" % (dt1,))
for dt2 in 'bhlqp' + np.typecodes['Float']:
assert_(np.array(1, dtype=dt1) > np.array(-1, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
assert_(not np.array(1, dtype=dt1) < np.array(-1, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
assert_(np.array(-1, dtype=dt1) == np.array(-1, dtype=dt2),
"type %s and %s failed" % (dt1, dt2))
def test_to_bool_scalar(self):
assert_equal(bool(np.array([False])), False)
assert_equal(bool(np.array([True])), True)
assert_equal(bool(np.array([[42]])), True)
assert_raises(ValueError, bool, np.array([1, 2]))
class NotConvertible:
def __bool__(self):
raise NotImplementedError
assert_raises(NotImplementedError, bool, np.array(NotConvertible()))
assert_raises(NotImplementedError, bool, np.array([NotConvertible()]))
self_containing = np.array([None])
self_containing[0] = self_containing
try:
Error = RecursionError
except NameError:
Error = RuntimeError # python < 3.5
assert_raises(Error, bool, self_containing) # previously stack overflow
self_containing[0] = None # resolve circular reference
def test_to_int_scalar(self):
# gh-9972 means that these aren't always the same
int_funcs = (int, lambda x: x.__int__())
for int_func in int_funcs:
assert_equal(int_func(np.array(0)), 0)
assert_equal(int_func(np.array([1])), 1)
assert_equal(int_func(np.array([[42]])), 42)
assert_raises(TypeError, int_func, np.array([1, 2]))
# gh-9972
assert_equal(4, int_func(np.array('4')))
assert_equal(5, int_func(np.bytes_(b'5')))
assert_equal(6, int_func(np.unicode_(u'6')))
class HasTrunc:
def __trunc__(self):
return 3
assert_equal(3, int_func(np.array(HasTrunc())))
assert_equal(3, int_func(np.array([HasTrunc()])))
class NotConvertible:
def __int__(self):
raise NotImplementedError
assert_raises(NotImplementedError,
int_func, np.array(NotConvertible()))
assert_raises(NotImplementedError,
int_func, np.array([NotConvertible()]))
class TestWhere:
def test_basic(self):
dts = [bool, np.int16, np.int32, np.int64, np.double, np.complex128,
np.longdouble, np.clongdouble]
for dt in dts:
c = np.ones(53, dtype=bool)
assert_equal(np.where( c, dt(0), dt(1)), dt(0))
assert_equal(np.where(~c, dt(0), dt(1)), dt(1))
assert_equal(np.where(True, dt(0), dt(1)), dt(0))
assert_equal(np.where(False, dt(0), dt(1)), dt(1))
d = np.ones_like(c).astype(dt)
e = np.zeros_like(d)
r = d.astype(dt)
c[7] = False
r[7] = e[7]
assert_equal(np.where(c, e, e), e)
assert_equal(np.where(c, d, e), r)
assert_equal(np.where(c, d, e[0]), r)
assert_equal(np.where(c, d[0], e), r)
assert_equal(np.where(c[::2], d[::2], e[::2]), r[::2])
assert_equal(np.where(c[1::2], d[1::2], e[1::2]), r[1::2])
assert_equal(np.where(c[::3], d[::3], e[::3]), r[::3])
assert_equal(np.where(c[1::3], d[1::3], e[1::3]), r[1::3])
assert_equal(np.where(c[::-2], d[::-2], e[::-2]), r[::-2])
assert_equal(np.where(c[::-3], d[::-3], e[::-3]), r[::-3])
assert_equal(np.where(c[1::-3], d[1::-3], e[1::-3]), r[1::-3])
def test_exotic(self):
# object
assert_array_equal(np.where(True, None, None), np.array(None))
# zero sized
m = np.array([], dtype=bool).reshape(0, 3)
b = np.array([], dtype=np.float64).reshape(0, 3)
assert_array_equal(np.where(m, 0, b), np.array([]).reshape(0, 3))
# object cast
d = np.array([-1.34, -0.16, -0.54, -0.31, -0.08, -0.95, 0.000, 0.313,
0.547, -0.18, 0.876, 0.236, 1.969, 0.310, 0.699, 1.013,
1.267, 0.229, -1.39, 0.487])
nan = float('NaN')
e = np.array(['5z', '0l', nan, 'Wz', nan, nan, 'Xq', 'cs', nan, nan,
'QN', nan, nan, 'Fd', nan, nan, 'kp', nan, '36', 'i1'],
dtype=object)
m = np.array([0, 0, 1, 0, 1, 1, 0, 0, 1, 1,
0, 1, 1, 0, 1, 1, 0, 1, 0, 0], dtype=bool)
r = e[:]
r[np.where(m)] = d[np.where(m)]
assert_array_equal(np.where(m, d, e), r)
r = e[:]
r[np.where(~m)] = d[np.where(~m)]
assert_array_equal(np.where(m, e, d), r)
assert_array_equal(np.where(m, e, e), e)
# minimal dtype result with NaN scalar (e.g required by pandas)
d = np.array([1., 2.], dtype=np.float32)
e = float('NaN')
assert_equal(np.where(True, d, e).dtype, np.float32)
e = float('Infinity')
assert_equal(np.where(True, d, e).dtype, np.float32)
e = float('-Infinity')
assert_equal(np.where(True, d, e).dtype, np.float32)
# also check upcast
e = float(1e150)
assert_equal(np.where(True, d, e).dtype, np.float64)
def test_ndim(self):
c = [True, False]
a = np.zeros((2, 25))
b = np.ones((2, 25))
r = np.where(np.array(c)[:,np.newaxis], a, b)
assert_array_equal(r[0], a[0])
assert_array_equal(r[1], b[0])
a = a.T
b = b.T
r = np.where(c, a, b)
assert_array_equal(r[:,0], a[:,0])
assert_array_equal(r[:,1], b[:,0])
def test_dtype_mix(self):
c = np.array([False, True, False, False, False, False, True, False,
False, False, True, False])
a = np.uint32(1)
b = np.array([5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.],
dtype=np.float64)
r = np.array([5., 1., 3., 2., -1., -4., 1., -10., 10., 1., 1., 3.],
dtype=np.float64)
assert_equal(np.where(c, a, b), r)
a = a.astype(np.float32)
b = b.astype(np.int64)
assert_equal(np.where(c, a, b), r)
# non bool mask
c = c.astype(int)
c[c != 0] = 34242324
assert_equal(np.where(c, a, b), r)
# invert
tmpmask = c != 0
c[c == 0] = 41247212
c[tmpmask] = 0
assert_equal(np.where(c, b, a), r)
def test_foreign(self):
c = np.array([False, True, False, False, False, False, True, False,
False, False, True, False])
r = np.array([5., 1., 3., 2., -1., -4., 1., -10., 10., 1., 1., 3.],
dtype=np.float64)
a = np.ones(1, dtype='>i4')
b = np.array([5., 0., 3., 2., -1., -4., 0., -10., 10., 1., 0., 3.],
dtype=np.float64)
assert_equal(np.where(c, a, b), r)
b = b.astype('>f8')
assert_equal(np.where(c, a, b), r)
a = a.astype('<i4')
assert_equal(np.where(c, a, b), r)
c = c.astype('>i4')
assert_equal(np.where(c, a, b), r)
def test_error(self):
c = [True, True]
a = np.ones((4, 5))
b = np.ones((5, 5))
assert_raises(ValueError, np.where, c, a, a)
assert_raises(ValueError, np.where, c[0], a, b)
def test_string(self):
# gh-4778 check strings are properly filled with nulls
a = np.array("abc")
b = np.array("x" * 753)
assert_equal(np.where(True, a, b), "abc")
assert_equal(np.where(False, b, a), "abc")
# check native datatype sized strings
a = np.array("abcd")
b = np.array("x" * 8)
assert_equal(np.where(True, a, b), "abcd")
assert_equal(np.where(False, b, a), "abcd")
def test_empty_result(self):
# pass empty where result through an assignment which reads the data of
# empty arrays, error detectable with valgrind, see gh-8922
x = np.zeros((1, 1))
ibad = np.vstack(np.where(x == 99.))
assert_array_equal(ibad,
np.atleast_2d(np.array([[],[]], dtype=np.intp)))
def test_largedim(self):
# invalid read regression gh-9304
shape = [10, 2, 3, 4, 5, 6]
np.random.seed(2)
array = np.random.rand(*shape)
for i in range(10):
benchmark = array.nonzero()
result = array.nonzero()
assert_array_equal(benchmark, result)
if not IS_PYPY:
# sys.getsizeof() is not valid on PyPy
class TestSizeOf:
def test_empty_array(self):
x = np.array([])
assert_(sys.getsizeof(x) > 0)
def check_array(self, dtype):
elem_size = dtype(0).itemsize
for length in [10, 50, 100, 500]:
x = np.arange(length, dtype=dtype)
assert_(sys.getsizeof(x) > length * elem_size)
def test_array_int32(self):
self.check_array(np.int32)
def test_array_int64(self):
self.check_array(np.int64)
def test_array_float32(self):
self.check_array(np.float32)
def test_array_float64(self):
self.check_array(np.float64)
def test_view(self):
d = np.ones(100)
assert_(sys.getsizeof(d[...]) < sys.getsizeof(d))
def test_reshape(self):
d = np.ones(100)
assert_(sys.getsizeof(d) < sys.getsizeof(d.reshape(100, 1, 1).copy()))
@_no_tracing
def test_resize(self):
d = np.ones(100)
old = sys.getsizeof(d)
d.resize(50)
assert_(old > sys.getsizeof(d))
d.resize(150)
assert_(old < sys.getsizeof(d))
def test_error(self):
d = np.ones(100)
assert_raises(TypeError, d.__sizeof__, "a")
class TestHashing:
def test_arrays_not_hashable(self):
x = np.ones(3)
assert_raises(TypeError, hash, x)
def test_collections_hashable(self):
x = np.array([])
assert_(not isinstance(x, collections.abc.Hashable))
class TestArrayPriority:
# This will go away when __array_priority__ is settled, meanwhile
# it serves to check unintended changes.
op = operator
binary_ops = [
op.pow, op.add, op.sub, op.mul, op.floordiv, op.truediv, op.mod,
op.and_, op.or_, op.xor, op.lshift, op.rshift, op.mod, op.gt,
op.ge, op.lt, op.le, op.ne, op.eq
]
class Foo(np.ndarray):
__array_priority__ = 100.
def __new__(cls, *args, **kwargs):
return np.array(*args, **kwargs).view(cls)
class Bar(np.ndarray):
__array_priority__ = 101.
def __new__(cls, *args, **kwargs):
return np.array(*args, **kwargs).view(cls)
class Other:
__array_priority__ = 1000.
def _all(self, other):
return self.__class__()
__add__ = __radd__ = _all
__sub__ = __rsub__ = _all
__mul__ = __rmul__ = _all
__pow__ = __rpow__ = _all
__div__ = __rdiv__ = _all
__mod__ = __rmod__ = _all
__truediv__ = __rtruediv__ = _all
__floordiv__ = __rfloordiv__ = _all
__and__ = __rand__ = _all
__xor__ = __rxor__ = _all
__or__ = __ror__ = _all
__lshift__ = __rlshift__ = _all
__rshift__ = __rrshift__ = _all
__eq__ = _all
__ne__ = _all
__gt__ = _all
__ge__ = _all
__lt__ = _all
__le__ = _all
def test_ndarray_subclass(self):
a = np.array([1, 2])
b = self.Bar([1, 2])
for f in self.binary_ops:
msg = repr(f)
assert_(isinstance(f(a, b), self.Bar), msg)
assert_(isinstance(f(b, a), self.Bar), msg)
def test_ndarray_other(self):
a = np.array([1, 2])
b = self.Other()
for f in self.binary_ops:
msg = repr(f)
assert_(isinstance(f(a, b), self.Other), msg)
assert_(isinstance(f(b, a), self.Other), msg)
def test_subclass_subclass(self):
a = self.Foo([1, 2])
b = self.Bar([1, 2])
for f in self.binary_ops:
msg = repr(f)
assert_(isinstance(f(a, b), self.Bar), msg)
assert_(isinstance(f(b, a), self.Bar), msg)
def test_subclass_other(self):
a = self.Foo([1, 2])
b = self.Other()
for f in self.binary_ops:
msg = repr(f)
assert_(isinstance(f(a, b), self.Other), msg)
assert_(isinstance(f(b, a), self.Other), msg)
class TestBytestringArrayNonzero:
def test_empty_bstring_array_is_falsey(self):
assert_(not np.array([''], dtype=str))
def test_whitespace_bstring_array_is_falsey(self):
a = np.array(['spam'], dtype=str)
a[0] = ' \0\0'
assert_(not a)
def test_all_null_bstring_array_is_falsey(self):
a = np.array(['spam'], dtype=str)
a[0] = '\0\0\0\0'
assert_(not a)
def test_null_inside_bstring_array_is_truthy(self):
a = np.array(['spam'], dtype=str)
a[0] = ' \0 \0'
assert_(a)
class TestUnicodeEncoding:
"""
Tests for encoding related bugs, such as UCS2 vs UCS4, round-tripping
issues, etc
"""
def test_round_trip(self):
""" Tests that GETITEM, SETITEM, and PyArray_Scalar roundtrip """
# gh-15363
arr = np.zeros(shape=(), dtype="U1")
for i in range(1, sys.maxunicode + 1):
expected = chr(i)
arr[()] = expected
assert arr[()] == expected
assert arr.item() == expected
def test_assign_scalar(self):
# gh-3258
l = np.array(['aa', 'bb'])
l[:] = np.unicode_('cc')
assert_equal(l, ['cc', 'cc'])
def test_fill_scalar(self):
# gh-7227
l = np.array(['aa', 'bb'])
l.fill(np.unicode_('cc'))
assert_equal(l, ['cc', 'cc'])
class TestUnicodeArrayNonzero:
def test_empty_ustring_array_is_falsey(self):
assert_(not np.array([''], dtype=np.unicode_))
def test_whitespace_ustring_array_is_falsey(self):
a = np.array(['eggs'], dtype=np.unicode_)
a[0] = ' \0\0'
assert_(not a)
def test_all_null_ustring_array_is_falsey(self):
a = np.array(['eggs'], dtype=np.unicode_)
a[0] = '\0\0\0\0'
assert_(not a)
def test_null_inside_ustring_array_is_truthy(self):
a = np.array(['eggs'], dtype=np.unicode_)
a[0] = ' \0 \0'
assert_(a)
class TestFormat:
def test_0d(self):
a = np.array(np.pi)
assert_equal('{:0.3g}'.format(a), '3.14')
assert_equal('{:0.3g}'.format(a[()]), '3.14')
def test_1d_no_format(self):
a = np.array([np.pi])
assert_equal('{}'.format(a), str(a))
def test_1d_format(self):
# until gh-5543, ensure that the behaviour matches what it used to be
a = np.array([np.pi])
assert_raises(TypeError, '{:30}'.format, a)
from numpy.testing import IS_PYPY
class TestCTypes:
def test_ctypes_is_available(self):
test_arr = np.array([[1, 2, 3], [4, 5, 6]])
assert_equal(ctypes, test_arr.ctypes._ctypes)
assert_equal(tuple(test_arr.ctypes.shape), (2, 3))
def test_ctypes_is_not_available(self):
from numpy.core import _internal
_internal.ctypes = None
try:
test_arr = np.array([[1, 2, 3], [4, 5, 6]])
assert_(isinstance(test_arr.ctypes._ctypes,
_internal._missing_ctypes))
assert_equal(tuple(test_arr.ctypes.shape), (2, 3))
finally:
_internal.ctypes = ctypes
def _make_readonly(x):
x.flags.writeable = False
return x
@pytest.mark.parametrize('arr', [
np.array([1, 2, 3]),
np.array([['one', 'two'], ['three', 'four']]),
np.array((1, 2), dtype='i4,i4'),
np.zeros((2,), dtype=
np.dtype(dict(
formats=['<i4', '<i4'],
names=['a', 'b'],
offsets=[0, 2],
itemsize=6
))
),
np.array([None], dtype=object),
np.array([]),
np.empty((0, 0)),
_make_readonly(np.array([1, 2, 3])),
], ids=[
'1d',
'2d',
'structured',
'overlapping',
'object',
'empty',
'empty-2d',
'readonly'
])
def test_ctypes_data_as_holds_reference(self, arr):
# gh-9647
# create a copy to ensure that pytest does not mess with the refcounts
arr = arr.copy()
arr_ref = weakref.ref(arr)
ctypes_ptr = arr.ctypes.data_as(ctypes.c_void_p)
# `ctypes_ptr` should hold onto `arr`
del arr
break_cycles()
assert_(arr_ref() is not None, "ctypes pointer did not hold onto a reference")
# but when the `ctypes_ptr` object dies, so should `arr`
del ctypes_ptr
if IS_PYPY:
# Pypy does not recycle arr objects immediately. Trigger gc to
# release arr. Cpython uses refcounts. An explicit call to gc
# should not be needed here.
break_cycles()
assert_(arr_ref() is None, "unknowable whether ctypes pointer holds a reference")
def test_ctypes_as_parameter_holds_reference(self):
arr = np.array([None]).copy()
arr_ref = weakref.ref(arr)
ctypes_ptr = arr.ctypes._as_parameter_
# `ctypes_ptr` should hold onto `arr`
del arr
break_cycles()
assert_(arr_ref() is not None, "ctypes pointer did not hold onto a reference")
# but when the `ctypes_ptr` object dies, so should `arr`
del ctypes_ptr
if IS_PYPY:
break_cycles()
assert_(arr_ref() is None, "unknowable whether ctypes pointer holds a reference")
class TestWritebackIfCopy:
# all these tests use the WRITEBACKIFCOPY mechanism
def test_argmax_with_out(self):
mat = np.eye(5)
out = np.empty(5, dtype='i2')
res = np.argmax(mat, 0, out=out)
assert_equal(res, range(5))
def test_argmin_with_out(self):
mat = -np.eye(5)
out = np.empty(5, dtype='i2')
res = np.argmin(mat, 0, out=out)
assert_equal(res, range(5))
def test_insert_noncontiguous(self):
a = np.arange(6).reshape(2,3).T # force non-c-contiguous
# uses arr_insert
np.place(a, a>2, [44, 55])
assert_equal(a, np.array([[0, 44], [1, 55], [2, 44]]))
# hit one of the failing paths
assert_raises(ValueError, np.place, a, a>20, [])
def test_put_noncontiguous(self):
a = np.arange(6).reshape(2,3).T # force non-c-contiguous
np.put(a, [0, 2], [44, 55])
assert_equal(a, np.array([[44, 3], [55, 4], [2, 5]]))
def test_putmask_noncontiguous(self):
a = np.arange(6).reshape(2,3).T # force non-c-contiguous
# uses arr_putmask
np.putmask(a, a>2, a**2)
assert_equal(a, np.array([[0, 9], [1, 16], [2, 25]]))
def test_take_mode_raise(self):
a = np.arange(6, dtype='int')
out = np.empty(2, dtype='int')
np.take(a, [0, 2], out=out, mode='raise')
assert_equal(out, np.array([0, 2]))
def test_choose_mod_raise(self):
a = np.array([[1, 0, 1], [0, 1, 0], [1, 0, 1]])
out = np.empty((3,3), dtype='int')
choices = [-10, 10]
np.choose(a, choices, out=out, mode='raise')
assert_equal(out, np.array([[ 10, -10, 10],
[-10, 10, -10],
[ 10, -10, 10]]))
def test_flatiter__array__(self):
a = np.arange(9).reshape(3,3)
b = a.T.flat
c = b.__array__()
# triggers the WRITEBACKIFCOPY resolution, assuming refcount semantics
del c
def test_dot_out(self):
# if HAVE_CBLAS, will use WRITEBACKIFCOPY
a = np.arange(9, dtype=float).reshape(3,3)
b = np.dot(a, a, out=a)
assert_equal(b, np.array([[15, 18, 21], [42, 54, 66], [69, 90, 111]]))
def test_view_assign(self):
from numpy.core._multiarray_tests import npy_create_writebackifcopy, npy_resolve
arr = np.arange(9).reshape(3, 3).T
arr_wb = npy_create_writebackifcopy(arr)
assert_(arr_wb.flags.writebackifcopy)
assert_(arr_wb.base is arr)
arr_wb[...] = -100
npy_resolve(arr_wb)
# arr changes after resolve, even though we assigned to arr_wb
assert_equal(arr, -100)
# after resolve, the two arrays no longer reference each other
assert_(arr_wb.ctypes.data != 0)
assert_equal(arr_wb.base, None)
# assigning to arr_wb does not get transferred to arr
arr_wb[...] = 100
assert_equal(arr, -100)
@pytest.mark.leaks_references(
reason="increments self in dealloc; ignore since deprecated path.")
def test_dealloc_warning(self):
with suppress_warnings() as sup:
sup.record(RuntimeWarning)
arr = np.arange(9).reshape(3, 3)
v = arr.T
_multiarray_tests.npy_abuse_writebackifcopy(v)
assert len(sup.log) == 1
def test_view_discard_refcount(self):
from numpy.core._multiarray_tests import npy_create_writebackifcopy, npy_discard
arr = np.arange(9).reshape(3, 3).T
orig = arr.copy()
if HAS_REFCOUNT:
arr_cnt = sys.getrefcount(arr)
arr_wb = npy_create_writebackifcopy(arr)
assert_(arr_wb.flags.writebackifcopy)
assert_(arr_wb.base is arr)
arr_wb[...] = -100
npy_discard(arr_wb)
# arr remains unchanged after discard
assert_equal(arr, orig)
# after discard, the two arrays no longer reference each other
assert_(arr_wb.ctypes.data != 0)
assert_equal(arr_wb.base, None)
if HAS_REFCOUNT:
assert_equal(arr_cnt, sys.getrefcount(arr))
# assigning to arr_wb does not get transferred to arr
arr_wb[...] = 100
assert_equal(arr, orig)
class TestArange:
def test_infinite(self):
assert_raises_regex(
ValueError, "size exceeded",
np.arange, 0, np.inf
)
def test_nan_step(self):
assert_raises_regex(
ValueError, "cannot compute length",
np.arange, 0, 1, np.nan
)
def test_zero_step(self):
assert_raises(ZeroDivisionError, np.arange, 0, 10, 0)
assert_raises(ZeroDivisionError, np.arange, 0.0, 10.0, 0.0)
# empty range
assert_raises(ZeroDivisionError, np.arange, 0, 0, 0)
assert_raises(ZeroDivisionError, np.arange, 0.0, 0.0, 0.0)
class TestArrayFinalize:
""" Tests __array_finalize__ """
def test_receives_base(self):
# gh-11237
class SavesBase(np.ndarray):
def __array_finalize__(self, obj):
self.saved_base = self.base
a = np.array(1).view(SavesBase)
assert_(a.saved_base is a.base)
def test_lifetime_on_error(self):
# gh-11237
class RaisesInFinalize(np.ndarray):
def __array_finalize__(self, obj):
# crash, but keep this object alive
raise Exception(self)
# a plain object can't be weakref'd
class Dummy: pass
# get a weak reference to an object within an array
obj_arr = np.array(Dummy())
obj_ref = weakref.ref(obj_arr[()])
# get an array that crashed in __array_finalize__
with assert_raises(Exception) as e:
obj_arr.view(RaisesInFinalize)
obj_subarray = e.exception.args[0]
del e
assert_(isinstance(obj_subarray, RaisesInFinalize))
# reference should still be held by obj_arr
break_cycles()
assert_(obj_ref() is not None, "object should not already be dead")
del obj_arr
break_cycles()
assert_(obj_ref() is not None, "obj_arr should not hold the last reference")
del obj_subarray
break_cycles()
assert_(obj_ref() is None, "no references should remain")
def test_orderconverter_with_nonASCII_unicode_ordering():
# gh-7475
a = np.arange(5)
assert_raises(ValueError, a.flatten, order=u'\xe2')
def test_equal_override():
# gh-9153: ndarray.__eq__ uses special logic for structured arrays, which
# did not respect overrides with __array_priority__ or __array_ufunc__.
# The PR fixed this for __array_priority__ and __array_ufunc__ = None.
class MyAlwaysEqual:
def __eq__(self, other):
return "eq"
def __ne__(self, other):
return "ne"
class MyAlwaysEqualOld(MyAlwaysEqual):
__array_priority__ = 10000
class MyAlwaysEqualNew(MyAlwaysEqual):
__array_ufunc__ = None
array = np.array([(0, 1), (2, 3)], dtype='i4,i4')
for my_always_equal_cls in MyAlwaysEqualOld, MyAlwaysEqualNew:
my_always_equal = my_always_equal_cls()
assert_equal(my_always_equal == array, 'eq')
assert_equal(array == my_always_equal, 'eq')
assert_equal(my_always_equal != array, 'ne')
assert_equal(array != my_always_equal, 'ne')
def test_npymath_complex():
# Smoketest npymath functions
from numpy.core._multiarray_tests import (
npy_cabs, npy_carg)
funcs = {npy_cabs: np.absolute,
npy_carg: np.angle}
vals = (1, np.inf, -np.inf, np.nan)
types = (np.complex64, np.complex128, np.clongdouble)
for fun, npfun in funcs.items():
for x, y in itertools.product(vals, vals):
for t in types:
z = t(complex(x, y))
got = fun(z)
expected = npfun(z)
assert_allclose(got, expected)
def test_npymath_real():
# Smoketest npymath functions
from numpy.core._multiarray_tests import (
npy_log10, npy_cosh, npy_sinh, npy_tan, npy_tanh)
funcs = {npy_log10: np.log10,
npy_cosh: np.cosh,
npy_sinh: np.sinh,
npy_tan: np.tan,
npy_tanh: np.tanh}
vals = (1, np.inf, -np.inf, np.nan)
types = (np.float32, np.float64, np.longdouble)
with np.errstate(all='ignore'):
for fun, npfun in funcs.items():
for x, t in itertools.product(vals, types):
z = t(x)
got = fun(z)
expected = npfun(z)
assert_allclose(got, expected)
def test_uintalignment_and_alignment():
# alignment code needs to satisfy these requirements:
# 1. numpy structs match C struct layout
# 2. ufuncs/casting is safe wrt to aligned access
# 3. copy code is safe wrt to "uint alidned" access
#
# Complex types are the main problem, whose alignment may not be the same
# as their "uint alignment".
#
# This test might only fail on certain platforms, where uint64 alignment is
# not equal to complex64 alignment. The second 2 tests will only fail
# for DEBUG=1.
d1 = np.dtype('u1,c8', align=True)
d2 = np.dtype('u4,c8', align=True)
d3 = np.dtype({'names': ['a', 'b'], 'formats': ['u1', d1]}, align=True)
assert_equal(np.zeros(1, dtype=d1)['f1'].flags['ALIGNED'], True)
assert_equal(np.zeros(1, dtype=d2)['f1'].flags['ALIGNED'], True)
assert_equal(np.zeros(1, dtype='u1,c8')['f1'].flags['ALIGNED'], False)
# check that C struct matches numpy struct size
s = _multiarray_tests.get_struct_alignments()
for d, (alignment, size) in zip([d1,d2,d3], s):
assert_equal(d.alignment, alignment)
assert_equal(d.itemsize, size)
# check that ufuncs don't complain in debug mode
# (this is probably OK if the aligned flag is true above)
src = np.zeros((2,2), dtype=d1)['f1'] # 4-byte aligned, often
np.exp(src) # assert fails?
# check that copy code doesn't complain in debug mode
dst = np.zeros((2,2), dtype='c8')
dst[:,1] = src[:,1] # assert in lowlevel_strided_loops fails?
class TestAlignment:
# adapted from scipy._lib.tests.test__util.test__aligned_zeros
# Checks that unusual memory alignments don't trip up numpy.
# In particular, check RELAXED_STRIDES don't trip alignment assertions in
# NDEBUG mode for size-0 arrays (gh-12503)
def check(self, shape, dtype, order, align):
err_msg = repr((shape, dtype, order, align))
x = _aligned_zeros(shape, dtype, order, align=align)
if align is None:
align = np.dtype(dtype).alignment
assert_equal(x.__array_interface__['data'][0] % align, 0)
if hasattr(shape, '__len__'):
assert_equal(x.shape, shape, err_msg)
else:
assert_equal(x.shape, (shape,), err_msg)
assert_equal(x.dtype, dtype)
if order == "C":
assert_(x.flags.c_contiguous, err_msg)
elif order == "F":
if x.size > 0:
assert_(x.flags.f_contiguous, err_msg)
elif order is None:
assert_(x.flags.c_contiguous, err_msg)
else:
raise ValueError()
def test_various_alignments(self):
for align in [1, 2, 3, 4, 8, 12, 16, 32, 64, None]:
for n in [0, 1, 3, 11]:
for order in ["C", "F", None]:
for dtype in list(np.typecodes["All"]) + ['i4,i4,i4']:
if dtype == 'O':
# object dtype can't be misaligned
continue
for shape in [n, (1, 2, 3, n)]:
self.check(shape, np.dtype(dtype), order, align)
def test_strided_loop_alignments(self):
# particularly test that complex64 and float128 use right alignment
# code-paths, since these are particularly problematic. It is useful to
# turn on USE_DEBUG for this test, so lowlevel-loop asserts are run.
for align in [1, 2, 4, 8, 12, 16, None]:
xf64 = _aligned_zeros(3, np.float64)
xc64 = _aligned_zeros(3, np.complex64, align=align)
xf128 = _aligned_zeros(3, np.longdouble, align=align)
# test casting, both to and from misaligned
with suppress_warnings() as sup:
sup.filter(np.ComplexWarning, "Casting complex values")
xc64.astype('f8')
xf64.astype(np.complex64)
test = xc64 + xf64
xf128.astype('f8')
xf64.astype(np.longdouble)
test = xf128 + xf64
test = xf128 + xc64
# test copy, both to and from misaligned
# contig copy
xf64[:] = xf64.copy()
xc64[:] = xc64.copy()
xf128[:] = xf128.copy()
# strided copy
xf64[::2] = xf64[::2].copy()
xc64[::2] = xc64[::2].copy()
xf128[::2] = xf128[::2].copy()
def test_getfield():
a = np.arange(32, dtype='uint16')
if sys.byteorder == 'little':
i = 0
j = 1
else:
i = 1
j = 0
b = a.getfield('int8', i)
assert_equal(b, a)
b = a.getfield('int8', j)
assert_equal(b, 0)
pytest.raises(ValueError, a.getfield, 'uint8', -1)
pytest.raises(ValueError, a.getfield, 'uint8', 16)
pytest.raises(ValueError, a.getfield, 'uint64', 0)
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